View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12660_low_13 (Length: 398)
Name: NF12660_low_13
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_13 |
 | |
|
| [»] scaffold0565 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 7614278 - 7613897
Alignment:
| Q |
1 |
gcaatatttactcattttactagagcaaaaatagtatactatttaactggaaagattatgtgccactaaatttagcatagagagaaagaatagtactagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7614278 |
gcaatatttactcattttactagagcaaaaatagtatactatttaactggaaagattatgtgccactaaatttagcatagagagaaaaaatagtactagt |
7614179 |
T |
|
| Q |
101 |
tgttgtccagtttcttctctaattccagcagcagcagaagcataattgactccttggagtatttcttggtctctggctgttgaatagggagatatgtagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7614178 |
tgttgtccagtttcttctctaattccagcagcagcagaagcataattgactccttggagtatttcttggtctctggctgttgaatagggagatatgtagc |
7614079 |
T |
|
| Q |
201 |
cctcaaatcccaatagctcagctgtcaaatttcaacacaagatttatatgcatgtatatataaagtaacataactattaaattagaatcaattgcgtatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
7614078 |
cctcaaatcccaatagctcagctgtcaaatttcaacacaagatttatatgcatgtatatataaagtaacataactattaaattagagtcaattgcatatt |
7613979 |
T |
|
| Q |
301 |
gattagaaattcaccatttaaagtaaaaaagtaataatttagaattcgaacgtcagtctctgaatatcgcaacgtttctacc |
382 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
7613978 |
ggttagaaattcaccatttaaagtaaaaaagtaataatttaaaattcaaacatcattctctgaatatcgcaacgtttctacc |
7613897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 4668 - 4801
Alignment:
| Q |
100 |
ttgttgtccagtttcttctctaattccagcagcagcagaagcataattgactccttggagtatttcttggtctctggctgttgaatagggagatatgtag |
199 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| || |||||||||||||||||| |||||||| | || |||| |||| || ||| | || |||||| |
|
|
| T |
4668 |
ttgttgtcctgtttcttctctgattccagcagctgctgaagcataattgactcctctgagtatttgtcggcctctagctgatgcatacgaaggtatgtaa |
4767 |
T |
|
| Q |
200 |
ccctcaaatcccaatagctcagctgtcaaatttc |
233 |
Q |
| |
|
|| | || |||||| |||||||||| ||||||| |
|
|
| T |
4768 |
ccattgaaccccaattgctcagctgttaaatttc |
4801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 36362505 - 36362562
Alignment:
| Q |
105 |
gtccagtttcttctctaattccagcagcagcagaagcataattgactccttggagtat |
162 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
36362505 |
gtccagtttcctctctaattccagctgctgcagaagcataattgactcctttgagtat |
36362562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University