View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_15 (Length: 381)
Name: NF12660_low_15
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_15 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 31040242 - 31039858
Alignment:
| Q |
17 |
acatcataatatactataaactactattttattaccatttacatgcttttaccaagacacgaacttgtgaataatgatttaaatctttcaatttaacaca |
116 |
Q |
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| T |
31040242 |
acataataatatactataaactactattttattaccatttacatgcttttaccaagacacgaacttgtgaataatgatttaaatctttcaatttaacaca |
31040143 |
T |
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| Q |
117 |
atcctttgtttgaattttgttttgtatcccatt-----gttttgaaagataatatgtag---------------ctatgatatgtgcaaatgttcttata |
196 |
Q |
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| T |
31040142 |
atcctttatttgaattttgttttgtatcccattatattgttttgaaagataatatgtagttgttgtacatgtagctatgatatgtgcaaatgttcttata |
31040043 |
T |
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| Q |
197 |
tagagtttaaatcaaccacttgatgcaaaaatcataatacacgaaagaaggattaagccgaaaaaaccttagnnnnnnnttactagaattacaagggaat |
296 |
Q |
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| T |
31040042 |
tagagtttaaatcaaccacttgatgcaaaaatcataatacacgaaagaaggattaagccggaaaaaccttagaaaaaaattactagaattacaagggaat |
31039943 |
T |
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| Q |
297 |
gatgaatggtacaactaaattgaagtcgataaaaaacttccgagtcaatgcataaacttgatcactgttttatgggttttctatc |
381 |
Q |
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| T |
31039942 |
gatgaatggtacaactaaattgaagtcgataaaaaacttacgagtcaatgcataaacttgatcactgttttatgggttttctatc |
31039858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 31091740 - 31091971
Alignment:
| Q |
31 |
tataaactactattttattaccatttacatgcttttaccaagacacgaacttgtgaataatgatttaaatctttcaatttaacacaatcctttgtttgaa |
130 |
Q |
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| T |
31091740 |
tataaactactattttattaccatttacatgcttttaccaagacacgaacttgtgaataatgatttaaatctttcaatttaacacaatcctttgtttgaa |
31091839 |
T |
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| Q |
131 |
tttt-gttttgtatcccattgttttgaaagataatatgtagctatgatatgtgcaaatgttcttatatagagtttaaatcaaccacttgatgcaaaaatc |
229 |
Q |
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| T |
31091840 |
tttttgttttgtatcccattgttttgaaagataatatgtagctatgatatgtgcaaatgttcttatatagagtttaaatcaaccacttgatgcaaaaatc |
31091939 |
T |
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| Q |
230 |
ataatacacgaaagaaggattaagccgaaaaa |
261 |
Q |
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| T |
31091940 |
ataatgcacgaaagaaggaataagcccaaaaa |
31091971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 31075786 - 31075722
Alignment:
| Q |
93 |
atttaaatctttcaatttaacacaatcctttgtttgaattttgttttgtatcccattgttttgaa |
157 |
Q |
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| T |
31075786 |
atttagatctttcaagttaacacaatccttagtttgaattttgttttgtatcccattgttttgaa |
31075722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 31075724 - 31075692
Alignment:
| Q |
293 |
gaatgatgaatggtacaactaaattgaagtcga |
325 |
Q |
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| T |
31075724 |
gaatgatgaatggtacaactaaattgaagtcga |
31075692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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