View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_18 (Length: 368)
Name: NF12660_low_18
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 45942589 - 45942947
Alignment:
| Q |
1 |
tgttaccctttcgaaatcatatgtggnnnnnnncgtctttttctttaaagcaaaaaactcttgctgaattgctctttaaaaatgtcgttttctttaaagc |
100 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45942589 |
tgttaccctttcgaaatcatatgtggaaaaaaacgtcgttttctttaaagcaaaaaactcttgctgaattgctctttaaaaatgtcgttttctttaaagc |
45942688 |
T |
|
| Q |
101 |
aaaaaagtcttgctgaattgctgtttactttttgcttagatatgatctactctgcctcgaaggattggctcaagccctccgagttttctgtgggttccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45942689 |
aaaaaagtcttgctgaattgctgtttactttttgcttagatatgatctactctgcctcgaaggattggctcaagccctccgagttttctgtgggttccag |
45942788 |
T |
|
| Q |
201 |
gaaatccccacttacaaattgtctgacattagtaaggatgcaatgcttaaaatgcatgtgaagccagaggtgggtgtgttatacatacacaaattttcag |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45942789 |
gaaatccccacttacatattgtctgacattagtaaggatgcaatgcttaaaatgcatgtgaagccagaggtgggtgtgttatacatacacaaattttcag |
45942888 |
T |
|
| Q |
301 |
tacaagcctttgctaagtggatagtgaattatttctttttctcattgcagacatctctg |
359 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45942889 |
tacgagcctttgctaagtggatagtgaattatttctttttctcattgcagacatctctg |
45942947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 87 - 358
Target Start/End: Original strand, 33123466 - 33123739
Alignment:
| Q |
87 |
gttttctttaaagcaaaaaagtcttgctgaattgctgtttactttttgcttagatatgatctactctgcctcgaaggattggctcaagccctccgagttt |
186 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
33123466 |
gttttctttaaagcaaaat-gtcacgctgaattgctgtttactttttgctcagatatgacttactctgccttgaaggattggctcaagccctccgagttt |
33123564 |
T |
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| Q |
187 |
tctgtgggttccaggaaatccccacttacaaattgtctgacattagtaaggatgcaatgcttaaaatgcatgtgaagccagaggtgggtgtgttat--ac |
284 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||| || || | | | |
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| T |
33123565 |
tctgtgggttccaggaaatccctacttacaaattggctgacattagtaaggatgcaatgcataaaatacatgtaaagccagaggtaggcatgctgtgcat |
33123664 |
T |
|
| Q |
285 |
atacacaaattttcagtacaagcctttgctaagtggatagtgaattatttctttt-tctcattgcagacatctct |
358 |
Q |
| |
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|||||||| |||| |||||||||||||| |||||||| | |||||| |||||||| ||||||||||||||||||| |
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| T |
33123665 |
atacacaattttttagtacaagcctttgttaagtggaaaatgaattgtttcttttgtctcattgcagacatctct |
33123739 |
T |
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