View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_19 (Length: 343)
Name: NF12660_low_19
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38341251 - 38341540
Alignment:
| Q |
1 |
cataatatatgtaatttggggttcaaacccggccatcacaaaaacaaaagtatggttctggtccggaagagatgaaatatgagcaaattgaaaatttaac |
100 |
Q |
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| T |
38341251 |
cataatatatgtaatccgaggttcaaacccggccatcacaaaaacaaaagtatggttctggtccggaagagatgaaatatgagcaaattgaaaatttaac |
38341350 |
T |
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| Q |
101 |
ttcataccctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaaatgtccggtctaaaaagctact |
200 |
Q |
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| T |
38341351 |
ttcatagcctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaaatgtccggcctaaaaagctact |
38341450 |
T |
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| Q |
201 |
agtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttc--acgggaagttttgtttttggaaatattaggtgtaa |
288 |
Q |
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| T |
38341451 |
agtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttcatacgggaagttttgtttttggaaatattaggtgtaa |
38341540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 66 - 288
Target Start/End: Original strand, 38445509 - 38445733
Alignment:
| Q |
66 |
gaagagatgaaatatgagcaaattgaaaatttaacttcataccctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattct |
165 |
Q |
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| T |
38445509 |
gaagagatgaaatatgagcaaattgaaaatttaacttcatagcctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattct |
38445608 |
T |
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| Q |
166 |
aacaaattaaaaaatgtccggtctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttc--acgggaagtt |
263 |
Q |
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| T |
38445609 |
aacaaattaaaaaatgtccggcctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttcatacgggaagtt |
38445708 |
T |
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| Q |
264 |
ttgtttttggaaatattaggtgtaa |
288 |
Q |
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| T |
38445709 |
ttgtttttggaaatattaggtgtaa |
38445733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 38472267 - 38472362
Alignment:
| Q |
84 |
caaattgaaaatttaacttcataccctacatttgtacattta-cccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaa |
178 |
Q |
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|||||||||||||||||||||||||| |||||| ||| ||| |||| |||||| |||||| ||||||||||| || ||||||||||||| |||| |
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| T |
38472267 |
caaattgaaaatttaacttcataccccacatttatactcttacccctaaaaacatataaactaccctaaacacctttaattctaacaaatttaaaa |
38472362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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