View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12660_low_27 (Length: 305)

Name: NF12660_low_27
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12660_low_27
NF12660_low_27
[»] scaffold0428 (3 HSPs)
scaffold0428 (14-293)||(2315-2594)
scaffold0428 (14-239)||(15059-15278)
scaffold0428 (114-240)||(13771-13896)
[»] chr6 (11 HSPs)
chr6 (14-293)||(33258194-33258473)
chr6 (19-293)||(33414568-33414840)
chr6 (71-269)||(31564920-31565117)
chr6 (96-293)||(33269541-33269740)
chr6 (14-163)||(33293102-33293251)
chr6 (19-270)||(33395074-33395326)
chr6 (173-272)||(33384049-33384148)
chr6 (14-239)||(33278975-33279194)
chr6 (25-117)||(28872999-28873091)
chr6 (114-253)||(33406911-33407049)
chr6 (114-240)||(33280357-33280482)
[»] chr2 (1 HSPs)
chr2 (14-272)||(17447703-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 2594 - 2315
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2594 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 2495  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2494 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 2395  T
Q  214 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 15059 - 15278
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  15059 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 15157  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 213  Q
    ||||| ||||||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||    
T  15158 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 15252  T
Q  214 gactttgttggcagaagtgagaaatt 239  Q
    ||||||| |||||||||| |||||||    
T  15253 gactttgatggcagaagttagaaatt 15278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 13771 - 13896
Alignment:
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 213  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 13869  T
Q  214 gactttgttggcagaagtgagaaattt 240  Q
    |||||| ||||||||||||||||||||    
T  13870 gacttttttggcagaagtgagaaattt 13896  T

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Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 33258473 - 33258194
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258473 aaccggtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 33258374  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258373 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 33258274  T
Q  214 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258273 gactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 33414840 - 33414568
Alignment:
Q  19 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 118  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  33414840 gtgcagggatgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctga 33414741  T
Q  119 taagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactt 218  Q
    |||||||||||| ||||||||||  |||||||||||||||||||| || || |||| |||  |||||||||||||||||||||||| ||||||| |||||    
T  33414740 taagaaatccggaagactagcagctgaaggaagaatcggtacata-cattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactt 33414642  T
Q  219 tgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 293  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  || ||||||||||||    
T  33414641 tgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 71 - 269
Target Start/End: Original strand, 31564920 - 31565117
Alignment:
Q  71 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 170  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  |||||||||||||||||||| || ||     
T  31564920 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacata-cattca 31565018  T
Q  171 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgca 269  Q
    |||||||| |||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||||||| | ||||||||||||||    
T  31565019 cgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 293
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  96 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatat---cactcgcgattcacacattggtgttcta 192  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||  |||| ||||||||||||||||   || || | || ||  ||| |||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  193 attgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggtt 292  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggtt 33269542  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 33293251 - 33293102
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||||| ||||  |||||||||||||||| |    
T  33293251 aaccggtgctgggatgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtctctcattc 33293152  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacata 163  Q
    ||||||||||||||| | ||||||||||  ||||||||||| ||||||||    
T  33293151 gctgataagaaatccagaagactagcagctgaaggaagaattggtacata 33293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 33395326 - 33395074
Alignment:
Q  19 gtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctga 118  Q
    |||| ||||| |||||||||||||||||    ||||||||  ||||||||||||||||| | ||| |||| || |  | ||||||||||||||| |||||    
T  33395326 gtgctgggattatggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctcatcagctga 33395227  T
Q  119 taagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactt 218  Q
     ||||||||||| || |||||||  |||||||||||||||| ||| || |  |||| ||| |||   |||||| |||||||||||| |||||||||||||    
T  33395226 caagaaatccggtaggctagcagctgaaggaagaatcggtaaata-cattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactt 33395128  T
Q  219 tgttgg--cagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 270  Q
    ||||||  ||||||||| | ||| |||||||||||||  |||||| ||||||||    
T  33395127 tgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 33384148 - 33384049
Alignment:
Q  173 attcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 272  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 33279194 - 33278975
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatcc 113  Q
    |||| |||| |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| |||     
T  33279194 aaccggtgctgggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatca 33279096  T
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 213  Q
    ||||| ||||||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||    
T  33279095 gctgacaagaaatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaacc 33279001  T
Q  214 gactttgttggcagaagtgagaaatt 239  Q
    ||||||| |||||||||| |||||||    
T  33279000 gactttgatggcagaagttagaaatt 33278975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 28872999 - 28873091
Alignment:
Q  25 ggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctg 117  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||||   |||||||||||||||| ||||    
T  28872999 ggatgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 253
Target Start/End: Complemental strand, 33407049 - 33406911
Alignment:
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 213  Q
    ||||||||||||||| | ||||||||||  || |||| || |||||||||| | |  | ||| |  |||| ||||| |||||| |||||||  |||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatat-attgacaatttatgcattagtgttataattgtagtgaactatgaaacc 33406951  T
Q  214 gactttgttggcagaagtgagaaatttaaggagttggttg 253  Q
    ||||||||||||||||||||| ||||  ||||||||||||    
T  33406950 gactttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 33280482 - 33280357
Alignment:
Q  114 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 213  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 33280384  T
Q  214 gactttgttggcagaagtgagaaattt 240  Q
    |||||| ||||||||||||||||||||    
T  33280383 gacttttttggcagaagtgagaaattt 33280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 17447703 - 17447961
Alignment:
Q  14 aacctgtgcagggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaaggg-tctctcatc 112  Q
    |||| |||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||| ||||  |||||||| |||||||||    
T  17447703 aaccggtgctgggattatggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatc 17447802  T
Q  113 cgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaac 212  Q
    |||||||||||||||||| ||||| ||||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  ||||||    
T  17447803 cgctgataagaaatccggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaac 17447901  T
Q  213 cgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 272  Q
    |||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||    
T  17447902 cgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagt 17447961  T

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