View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_28 (Length: 304)
Name: NF12660_low_28
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 18134784 - 18134487
Alignment:
| Q |
1 |
aaattgaatattgagaaaaaagatcacttaccaacaacaatcaacgaccagttggagtattaagagacatgatcatgttatttccaccgggaagataagt |
100 |
Q |
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| T |
18134784 |
aaattgaatattgagaaaaaagatcacttaccaacaacaatcaacgaccagttggagtattaagagacatgatcatgttatttccaccaggaagataagt |
18134685 |
T |
|
| Q |
101 |
aacattaggcgatttcgctaacgtccttgcaatttccctagcagcctcaatcatcctaagttcaatcaaccccttcccaaaagcagcagtagcatcagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18134684 |
aacattaggcgatttcgctaacgtccttgcaatttccctagcagcctcaatcatcctaagttcaatcaaccccttcccaaaagcagcagtagcatcagaa |
18134585 |
T |
|
| Q |
201 |
atcaacttagcagcctcactttcaccttcagcccgaataatcgcagcccgacgctcttgctctgccttcatcacaacaaatttcgacctctctgcttc |
298 |
Q |
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| T |
18134584 |
atcaacttagcagcctcactctcaccttcagcccgaataatcgcagcccgacgctcttgctctgccttcatcacaacaaatttcgacctctctgcttc |
18134487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 129 - 295
Target Start/End: Original strand, 1382102 - 1382268
Alignment:
| Q |
129 |
gcaatttccctagcagcctcaatcatcctaagttcaatcaaccccttcccaaaagcagcagtagcatcagaaatcaacttagcagcctcactttcacctt |
228 |
Q |
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||||||||||| | |||||||||| ||||||| ||||||| |||| | ||| | ||||||||||||||||||||| ||| ||||| |||||||| || | |
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| T |
1382102 |
gcaatttccctggaagcctcaatcctcctaagctcaatcagccccataccagcaacagcagtagcatcagaaatcagctttgcagcatcactttctccct |
1382201 |
T |
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| Q |
229 |
cagcccgaataatcgcagcccgacgctcttgctctgccttcatcacaacaaatttcgacctctctgc |
295 |
Q |
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|||| || || || ||||| |||||||| || ||||||||||| |||||||| || ||||||||||| |
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| T |
1382202 |
cagcgcggatgattgcagcacgacgctcctgttctgccttcataacaacaaacttagacctctctgc |
1382268 |
T |
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