View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_30 (Length: 299)
Name: NF12660_low_30
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 35916218 - 35916486
Alignment:
| Q |
11 |
gccttaatcctttggttctcacgggaataagactgcgataattcagaattcggtcaggagttcttaccgataatatatatatacctattttttaacatct |
110 |
Q |
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| T |
35916218 |
gccttaatcctttggttctcacgggaataagactgcgataattcagaattcggtcaggagttcttaccgataatat--atatacctattttttaacatct |
35916315 |
T |
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| Q |
111 |
caatgtgtttgtcttatacattattggcaaaaaattatacaaattaatagattaaatgcatgtatagttttgctgacgaggttgcgggtttgcatctttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916316 |
caatgtgtttgtcttatacattattggcaaaaaattatacaaattaatatattaaatgcatgtatagttttgctgacgaggttgcgggtttgcatctttg |
35916415 |
T |
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| Q |
211 |
tgcaatgtaggggatgatcctgaattggtgaagaccaagttaagacattgggctcaagctgttgcatgttc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35916416 |
tgcaatgtaggggatgatcctgaattggtgaagaccaaattaagacattgggctcaagctgttgcatgttc |
35916486 |
T |
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