View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_33 (Length: 285)
Name: NF12660_low_33
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 2848185 - 2847906
Alignment:
| Q |
1 |
tcccaacaaatcaaaacagaaaccccatcaatttccactctctcattccctctaaatttccacttcaatttcctcacctccaaaaccctttccccatcca |
100 |
Q |
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| T |
2848185 |
tcccaacaaatcaaaacagaaaccccatcaatttccactctctcattccctctaaatttccacttcaatttcctcacctccaaaaccctttccccatcca |
2848086 |
T |
|
| Q |
101 |
cactaaacaacaacctcgtattgtttcctttattgtcatcatcacaatcactacctatctctatctcaacctctctaactttcccaccaaacctcgtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2848085 |
cactaaacaacaacctcgtattgtttcctttattgtcatcatcacaatcactacctatctctatctcaacctctctaactttcccaccaaacctcgtttt |
2847986 |
T |
|
| Q |
201 |
tgtagcgtacgaggatgatccatttctatttacctccatgtccacatgttccttttttagaacaagaatttgaggaatct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2847985 |
tgtagcgtacgaggatgatccatttctatttacctccatgtccacatgttccttttttagaacaagaatttgaggaatct |
2847906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 49078467 - 49078511
Alignment:
| Q |
25 |
ccatcaatttccactctctcattccctctaaatttccacttcaat |
69 |
Q |
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||||||||||| |||||||||||||||||||| ||||| |||||| |
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| T |
49078467 |
ccatcaatttcaactctctcattccctctaaacttccatttcaat |
49078511 |
T |
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