View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_35 (Length: 280)
Name: NF12660_low_35
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 42155919 - 42155663
Alignment:
| Q |
10 |
gcagaacctgtggcgctgaaatttgaaatatatgctattgtttgttaatattaaatttgtgaatctacctatcattctgttattttccctttggatcagt |
109 |
Q |
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| T |
42155919 |
gcagagcctctggcgctgaaatttgaaatatatgctattgtttgttaatattaaatttgtgaatctacctatcattctgttattttccctttggatcagt |
42155820 |
T |
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| Q |
110 |
agttgttatcacaaaaatccaacgtttaatttgtaaattatcaaaccaaatccccaacggtccaatttcacgtgatcacctctaagataaacaagaataa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42155819 |
agttgttatcacaaaaatccaacgtttaatttgtaaattatcaaaccaaatccccaacggtccaatttcacgtgaccacctctaagataaacaagaataa |
42155720 |
T |
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| Q |
210 |
acaatctaaaacaggacggtaactaacgtgccatgacactataaggacaagtttttg |
266 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42155719 |
acaatctaaaacaggacggtaactaatgtgccatgacactataaggacaagtttttg |
42155663 |
T |
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