View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_4 (Length: 529)
Name: NF12660_low_4
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 38 - 516
Target Start/End: Complemental strand, 29899641 - 29899163
Alignment:
| Q |
38 |
ctgattttacaaatttgagttcgctttttaatctagcctagactcgcaagaaacccctatttcatccttcacattgtttgttcttcctttacatttgaaa |
137 |
Q |
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| T |
29899641 |
ctgattttatgaatttgagttcgctttttaatctagcctagactcacaagaaacccctatttcatccttcacgttatttgttcttcctttacatttgaaa |
29899542 |
T |
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| Q |
138 |
cagagacggaacacagctccaaaacacaacatatgaagtgaacagctcctcaccagcaatgcacgtagacgtactctatctggcagccatcactgaaaca |
237 |
Q |
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| T |
29899541 |
cagagacagaacacagctccaaaacacaacatatgaagtgaacagctcctctccagcaacgcacgtagacgtactctatctggcagccatcactgaaaca |
29899442 |
T |
|
| Q |
238 |
cgaccttcacagggaatgtgtacaacactaaaacatggacctttctctccgacaatcttcattgcgacatgcacagcactggaaacacgacctccatagc |
337 |
Q |
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| T |
29899441 |
cgaccttcacagggaatgtgtacaacactaaaacatggacctttctctccgacgatcttcattgcaacatgcacagcactgaaaacacggcctccataga |
29899342 |
T |
|
| Q |
338 |
cacaaggcacaccacttgctctttagtatttttaagttgttgtcttattgtctaaagcttgcgttttctgatattagatgccttaataatctactgagtg |
437 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| || ||||| |
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| T |
29899341 |
cacaaggaacaccacttgccctttagtatttttaagttgttgtcttattgtcagaagcttgcgttgtgtgatattagatgccttaataatacacagagtg |
29899242 |
T |
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| Q |
438 |
atggtttttgcacttcatagagcatccttttcttgagtttttgtaactcggcatttaaaattttatgttgcacaggttc |
516 |
Q |
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| T |
29899241 |
atggtttttgcacttcatagagcatccttttcttgagtttttgtaactcggcatttaaaatttaatgttgcacaggttc |
29899163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 29899715 - 29899687
Alignment:
| Q |
15 |
atgaatgtggaaatgcttctgcactgatt |
43 |
Q |
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| T |
29899715 |
atgaatgtggaaatgcttctgcactgatt |
29899687 |
T |
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