View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_40 (Length: 265)
Name: NF12660_low_40
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 40100794 - 40101038
Alignment:
| Q |
20 |
ccatgagtcccaacacttggtaacataaattattgttctattttactaaatactnnnnnnnnntaaaa-------tgcaggaggagcaagtggtataggg |
112 |
Q |
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| T |
40100794 |
ccatgagtcccaacacttggtaacataaattattgttctgttttactaaatactaatataaaataaaaaaaataatgcaggaggagcaagtggtataggg |
40100893 |
T |
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| Q |
113 |
ttggagacaacaagagtgttggctcttaggaaggtccatgttatcattgctgcaagaaacattgaatctgcagaggaagccaaacaacaaataacacaag |
212 |
Q |
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| T |
40100894 |
ttggagacaacaagagtgttggctcttaggaaggtccatgttatcattgctgcaagaaacattgaatctgcagaggaagccaaacaacaaataacacaag |
40100993 |
T |
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| Q |
213 |
agaacaaatctgcacgagtggacataatgaaacttgacctatgct |
257 |
Q |
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| T |
40100994 |
agaacaaatctgcacgagtggacataatgaaacttgacctatgct |
40101038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 252
Target Start/End: Complemental strand, 29519157 - 29518990
Alignment:
| Q |
85 |
aaatgcaggaggagcaagtggtatagggttggagacaacaagagtgttggctcttaggaaggtccatgttatcattgctgcaagaaacattgaatctgca |
184 |
Q |
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| T |
29519157 |
aaatgcaggaggagcaagtggtataggcttggagacagcacgagtcttggctctccgaaaggtgcatgtcatcatcgccgcaagaaacatggagtctgca |
29519058 |
T |
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| Q |
185 |
gaggaagccaaacaacaaataacacaagagaacaaatctgcacgagtggacataatgaaacttgacct |
252 |
Q |
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| T |
29519057 |
aaggaagctaaacaaattatactacaagacaacgagtctgctcgagttgacataatgaagctcgacct |
29518990 |
T |
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