View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_47 (Length: 247)
Name: NF12660_low_47
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 26755952 - 26755714
Alignment:
| Q |
9 |
agcacagattgtttctcctatgagtttcacattttgatgttgacattactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagc |
108 |
Q |
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| T |
26755952 |
agcacaaattgtttctcctatgagtttcacattttgatgttgacattactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagc |
26755853 |
T |
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| Q |
109 |
aagtttagtgacagcttttctgagtgaaaaatcaagcatccattcctctgcattttttctatcatccatcatctgatgcttcagttcaaccttctctggt |
208 |
Q |
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| T |
26755852 |
aagtttagtgacagcttttctgagtgaaaaatcaagcatccattcctctgcattttttctatcatccatcatctgatgcttcagttcaaccttctctggt |
26755753 |
T |
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| Q |
209 |
tctcgatcagaaaccaagggcaggaaatttggctttctt |
247 |
Q |
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| T |
26755752 |
tctcgatcagaaaccaagggcaggaaatttggctttctt |
26755714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 6039275 - 6039423
Alignment:
| Q |
53 |
attactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagcaagtttagtgacagcttttctgagtgaaaaatcaagcatccatt |
152 |
Q |
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| T |
6039275 |
attacagtttcaaaggcttcaactagcaatgccactttcttctttctagcaggagcaagcttgttcacagcttgccttagtgcacaatcaaccatccaat |
6039374 |
T |
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| Q |
153 |
cctctgcattttttctatcatccatcatctgatgcttcagttcaacctt |
201 |
Q |
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| T |
6039375 |
cctctgcattctttctttcatccatcatttgatgcctcaaatcaacctt |
6039423 |
T |
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