View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_49 (Length: 243)
Name: NF12660_low_49
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 8186001 - 8185911
Alignment:
| Q |
9 |
agcagagagttggaagaaacaacgaaaccaatttgtttgaagaactgagagaaagcgttgtg-tttctgaaagtgggagattttagggttaggt |
101 |
Q |
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| T |
8186001 |
agcagagagttggaagaaac---gaaaccaatttgtttgaagaactgagagaaagcgttgtgttttctgaaagtgggagattttagggttaggt |
8185911 |
T |
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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 8185866 - 8185831
Alignment:
| Q |
153 |
gacaaaagaaggttggatatgttaaaaataaaataa |
188 |
Q |
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| T |
8185866 |
gacaaaagaaggttgcatatgttaaaaataaaataa |
8185831 |
T |
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