View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_5 (Length: 516)
Name: NF12660_low_5
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 15 - 501
Target Start/End: Complemental strand, 32316738 - 32316240
Alignment:
| Q |
15 |
cacagaacgcatccattgttcttgcaaattcgagcccagaagtttcattaataaattcgaagcttgtcttgattgagtacttgtcaaatgatcttttaag |
114 |
Q |
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| T |
32316738 |
cacagaacgcatccattgttcttgcaaattcgagcccagaagtttcattaataaattcgaagcttgtcttgattgagtacttgtcaaatgatcttttaag |
32316639 |
T |
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| Q |
115 |
aaaccaatacatgcatcactaatatttttaggtgcttcatatatgcaaacaaggacaaaaagagtgaagaaagtgaggttaaaaatgtttggtaggtttg |
214 |
Q |
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| T |
32316638 |
aaaccaatacatgcatcactaatatttttaggtgcttcatatatgcaaacaaggacaaaaagagtgaagaaagtgaggttaaaaatgtttggtaggtttg |
32316539 |
T |
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| Q |
215 |
gaccagagtcaagttttggaaaccttattaaagggctgtttttgtttgaaccataatgaagaatgtcttgaatgaaattaataaagagatttgaaatagt |
314 |
Q |
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| T |
32316538 |
gaccagagtcaagttttggaaaccttattaaagggctgtttttgtttgaaccataatgaagaatgtcttgaatgaaattaataaagagatttgaaatagt |
32316439 |
T |
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| Q |
315 |
ttctttgtctaataaattggtggtttttgagcttggcttaaatggttttgaagtccaaagatgaatagggtcaatattatt------------aatgata |
402 |
Q |
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| T |
32316438 |
ttctttgtctaataaattggtggtttttgagcttggcataaatggttttgaagtccaaagatgaatagggtcaatattattgaattcagcaacaatcata |
32316339 |
T |
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| Q |
403 |
aaagagagttttaaggattgatggattttggatatggtgagattgagtaatggttgagaagttgttaaagaacatatatttaaggagatggaatttgtt |
501 |
Q |
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| T |
32316338 |
aaagagagttttaaggattgatggattttggatatggtgagattgagtaatggttgagaagttgttgaagaacatacgtttaaggagatggaatttgtt |
32316240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 36041347 - 36041287
Alignment:
| Q |
259 |
tttgaaccataatgaagaatgtcttgaatgaaattaataaagagatttgaaatagtttctt |
319 |
Q |
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| T |
36041347 |
tttgaaccataattaaggatgtcttgtatgaaattaacaaggagatttgaaatggtttctt |
36041287 |
T |
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