View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_50 (Length: 243)
Name: NF12660_low_50
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2055742 - 2055501
Alignment:
| Q |
1 |
ttataagctacagttcaaacaaacaaagaattagctatgtgtttacatctattaaccaatcctttcaattaatatcttacaaacctgaccaaaaatcgaa |
100 |
Q |
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| T |
2055742 |
ttataagctacagttcaaacaaacaaagaattagttatgtgtttacatctattaaccgatcctttcaaataatatcttaaaaacctgaccaagaatcgaa |
2055643 |
T |
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| Q |
101 |
tcaatgagaccttaaggtcatggtttaatattggttcaatcacgatcgaacctgattacacatgaatcaattactattatcaatttgaatagaccgtgat |
200 |
Q |
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| T |
2055642 |
tcaatgagaccttaaggtcatggtttaatattggttcaatcacgatcgaacctgattacacacgaatcaattactattatcaatttgaatagaccgtgat |
2055543 |
T |
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| Q |
201 |
gggtttggtcaatctaatatgtccgatgagaagtctctgctc |
242 |
Q |
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| T |
2055542 |
gggtttggtcaatctaatatgtccgatgagaagtctctgctc |
2055501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 2051883 - 2051722
Alignment:
| Q |
3 |
ataagctacagttcaaacaaacaaagaattagctatgtgtttacatctattaaccaatcctttcaattaatatcttacaaacctgaccaaaaatcgaatc |
102 |
Q |
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| T |
2051883 |
ataagctacaattcaaacaaacaaataattagttgtatgtttacatctattatcga-tccttccaattaatatcttaaaaacctgaccaaaaatcgaatc |
2051785 |
T |
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| Q |
103 |
aatgagaccttaaggtcatggtttaatattggttcaatcacgatcgaacctgattacacatga |
165 |
Q |
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| T |
2051784 |
aattagacctttaggtcatggtttaatattggttcaaacacgatcgatcctggtgacacatga |
2051722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 2058887 - 2058835
Alignment:
| Q |
101 |
tcaatgagaccttaaggtcatggtttaatattggttcaatcacgatcgaacct |
153 |
Q |
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| T |
2058887 |
tcaatgagacctttaggtcatggtttaatattggttcaatcacgatcggacct |
2058835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 2058442 - 2058389
Alignment:
| Q |
188 |
aatagaccgtgatgggtttggtcaatctaatatgtccgatgagaagtctctgct |
241 |
Q |
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| T |
2058442 |
aatagactatgatgggtttggtcaatctactatgtccgatgagaggtctttgct |
2058389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2058946 - 2058893
Alignment:
| Q |
1 |
ttataagctacagttcaaacaaacaaagaattagctatgtgtttacatctatta |
54 |
Q |
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|||||||||||| ||||||||| |||| |||||| ||| |||||||| |||||| |
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| T |
2058946 |
ttataagctacaattcaaacaatcaaataattagatatatgtttacacctatta |
2058893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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