View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_52 (Length: 242)
Name: NF12660_low_52
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_52 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7247471 - 7247230
Alignment:
| Q |
1 |
tctatatcttggccaaatgcctttgttcctgggagaatcatcctccgacagagatcgcttccactttgacacaagtgaaaagggctttccaacagagctc |
100 |
Q |
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| T |
7247471 |
tctatatcttggccaaatgcctttgttcctgggagaatcatcctccgacagagatcgcttccactttgacacaagtgaaaagggctttccaacagagctc |
7247372 |
T |
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| Q |
101 |
ctcgtactggagctagcctcactctttgaaacctttccttgcaattcaatatcttcttggcgatcaaaaacatcagaaccaccatcaagatagctatcaa |
200 |
Q |
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| T |
7247371 |
ctcgtactggagctagcctcactctttgaaacctttcctcgcaattcaatatcttcttggcgatcaaaaacatcagaaccaccatcaagatagctatcaa |
7247272 |
T |
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| Q |
201 |
caacacgctttctggatatcttgaggttcttggcctttgtct |
242 |
Q |
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| T |
7247271 |
caacacgctttctggatatcttcaggttcttggcctttgtct |
7247230 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 52559517 - 52559437
Alignment:
| Q |
157 |
ttggcgatcaaaaacatcagaaccaccatcaagatagctatcaacaacacgctttctggatatcttgaggttcttggcctt |
237 |
Q |
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| T |
52559517 |
ttggcgatcataaccatctaatccgccatcaaagtagctatcaactacacggtttcgggatatcttgtagttcttggcctt |
52559437 |
T |
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