View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_59 (Length: 233)
Name: NF12660_low_59
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_59 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 48233968 - 48234184
Alignment:
| Q |
17 |
ttgaaagctacaaaaaattattattgggtgtgtttggatgttcttttgtgaaaactgtttaaatcatattgaagttcaaatttctttttcaaaacggaac |
116 |
Q |
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| T |
48233968 |
ttgaaagctacaaaaaattattattgggtgtatttggatgttcttttgtgaaaactgtttaaatcatattgaagttcaaatttctttttcaaaacagaac |
48234067 |
T |
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| Q |
117 |
caacaacatacgtgaattttaatacttttaatatttttcatgttcgtgtgatattttgtattaatcaattatttattgagtttaaatttttcattttagt |
216 |
Q |
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| T |
48234068 |
caacaacatacatgaattttaatacttttaatatttttcatgttcgtatgatattttgtattaatcaattatttattgagtttaaatttttcattttagt |
48234167 |
T |
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| Q |
217 |
cttcctaaaaatattct |
233 |
Q |
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|||||||||||| |||| |
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| T |
48234168 |
cttcctaaaaatgttct |
48234184 |
T |
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