View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_6 (Length: 501)
Name: NF12660_low_6
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 51613478 - 51613734
Alignment:
| Q |
1 |
tcataatatttaaccacattttatttatcatttgtttttattgttcttttaaaaccagtgtttcattgttatgccatcaacatgagggttattttatacg |
100 |
Q |
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| T |
51613478 |
tcataatatttaaccacgttttatttatcatttgtttttattgttcttttaaaacaagtgtttcattgttatgccatcaacatgagggttattttatacg |
51613577 |
T |
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| Q |
101 |
taaaaaacatcaacatgagtggttatattaattggttggatctaatacatgtaattgcactctttgaaggttgttggtgtgagtgtcaatttctatatgt |
200 |
Q |
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| T |
51613578 |
taaaaaacatcaacatgagtggttatattaattggttggatctaataaatgtaattgcactctttgaaggttgttggtgtgagtgttaatttctatatgt |
51613677 |
T |
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| Q |
201 |
tttaagtgcataggttgtataaattatcaagctatatcaccgaaagaatgactattg |
257 |
Q |
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| T |
51613678 |
tttaagtgtataggttgtataaattatcaagctatatcaccgaaagaatgactattg |
51613734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 256 - 492
Target Start/End: Original strand, 51613784 - 51614020
Alignment:
| Q |
256 |
tgtatatcatacataaaatgcaatgaatttgtgactacatacgacaaccaagagtaacaatataccataacatcttatactatagttagggttttagaat |
355 |
Q |
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| T |
51613784 |
tgtatatcatacataaaatgcaatgaatttgtgactacatacgacaaccaagagtaacaatataccataacatcttatactatagttagggttttagaat |
51613883 |
T |
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| Q |
356 |
gacatatcataatattagagcaggggttgtcatgactaacccttactagttaaatgggagaatgccttcgcccatacaaaaaccaaaggtggctacaacc |
455 |
Q |
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| T |
51613884 |
gacatatcataatattagagcagaggttgtcatgactaacccttactagttaaatgggagacaaccttcgcccatacaaaaaccaaaggtggctacaacc |
51613983 |
T |
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| Q |
456 |
gacctatagggtgtgtgttactagcgtcacgtctctg |
492 |
Q |
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| T |
51613984 |
gacctatagggtgtgtgttactagcgtcacgcctctg |
51614020 |
T |
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