View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_62 (Length: 230)
Name: NF12660_low_62
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 11183165 - 11183308
Alignment:
| Q |
13 |
aagaacaagaaagtaaaaactgatgatatctcatctaagagttactacaagaaatgaaagatacttagttttattaatatgatgacatataattatcaat |
112 |
Q |
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| T |
11183165 |
aagaacaagaaagtaaaaactgatgatatctcatctaagagttacaagaa-atatgaaagatacttagttttattaatatgatgacatataattatcaat |
11183263 |
T |
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| Q |
113 |
agccatagattacaaaaatagatcttacaaacacactgcattcaat |
158 |
Q |
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| T |
11183264 |
agccatagattac-aaaatagatcttacaaacacactgcattcaat |
11183308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 11190478 - 11190527
Alignment:
| Q |
128 |
aaatagatcttacaaacacactgcattcaatagccatatattacaaaata |
177 |
Q |
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| T |
11190478 |
aaatagaacttacaaacacactgcattcagtagccatagattacaaaata |
11190527 |
T |
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