View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12660_low_71 (Length: 203)

Name: NF12660_low_71
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12660_low_71
NF12660_low_71
[»] chr6 (2 HSPs)
chr6 (1-185)||(17590433-17590617)
chr6 (15-45)||(6419871-6419901)
[»] chr7 (1 HSPs)
chr7 (2-45)||(23371014-23371057)
[»] chr8 (1 HSPs)
chr8 (1-43)||(32726519-32726561)
[»] chr5 (2 HSPs)
chr5 (15-45)||(7771834-7771864)
chr5 (15-45)||(42396525-42396555)
[»] chr3 (4 HSPs)
chr3 (15-45)||(2147805-2147835)
chr3 (15-45)||(11819161-11819191)
chr3 (16-45)||(13701994-13702023)
chr3 (1-45)||(4219258-4219301)
[»] chr2 (2 HSPs)
chr2 (15-45)||(5754366-5754396)
chr2 (13-45)||(41797672-41797704)
[»] chr1 (2 HSPs)
chr1 (15-45)||(37822358-37822388)
chr1 (1-45)||(50107914-50107957)
[»] chr4 (2 HSPs)
chr4 (15-43)||(7861219-7861247)
chr4 (15-43)||(42197634-42197662)


Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 17590617 - 17590433
Alignment:
Q  1 acaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaagagaaagatgcatacacgtggaaatcacttatttaataatatttaggaaatatgtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17590617 acaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaagagaaagatgcatacaggtggaaatcacttatttaataatatttaggaaatatgtac 17590518  T
Q  101 gagtaatcttttctttaactcacatgaacaaaatagattacgtttctgatccttaaaattttaatttttcgccagatgttgtgac 185  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  17590517 gagtaatcttttctttaactcacatgaacaaaatagatttcgtttctgatccttaaaattttaatttttcgctagacgttgtgac 17590433  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 6419871 - 6419901
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||||||||||||||||||||    
T  6419871 agacgacgaaatcacaaaaacaaatgaaaga 6419901  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 23371014 - 23371057
Alignment:
Q  2 caaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 45  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||    
T  23371014 caaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaaga 23371057  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32726561 - 32726519
Alignment:
Q  1 acaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaa 43  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||    
T  32726561 acaaaattgtgttaagacggcgaaatcacataaacaaatgaaa 32726519  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 7771834 - 7771864
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||||||||||||||||||||    
T  7771834 agacgacgaaatcacaaaaacaaatgaaaga 7771864  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 42396525 - 42396555
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||||||||||||||||||||    
T  42396525 agacgacgaaatcacaaaaacaaatgaaaga 42396555  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 2147835 - 2147805
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||||||||||||||||||||    
T  2147835 agacgacgaaatcacaaaaacaaatgaaaga 2147805  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 11819191 - 11819161
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||||||||||||||||||||    
T  11819191 agacgacgaaatcacaaaaacaaatgaaaga 11819161  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 13701994 - 13702023
Alignment:
Q  16 gacgacgaaatcacaaaaacaaatgaaaga 45  Q
    ||||||||||||||||||||||||||||||    
T  13701994 gacgacgaaatcacaaaaacaaatgaaaga 13702023  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4219301 - 4219258
Alignment:
Q  1 acaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||    
T  4219301 acaaaatcgtgtta-gacgacgaaatcataaaaacaaacgaaaga 4219258  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 5754396 - 5754366
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||||||||||||||||||||    
T  5754396 agacgacgaaatcacaaaaacaaatgaaaga 5754366  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 41797704 - 41797672
Alignment:
Q  13 taagacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||||||||||||||| ||||||    
T  41797704 taagacgacgaaatcacaaaaacaaacgaaaga 41797672  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 37822358 - 37822388
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||||||||||||||||||||||    
T  37822358 agacgacgaaatcacaaaaacaaatgaaaga 37822388  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50107914 - 50107957
Alignment:
Q  1 acaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 45  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||    
T  50107914 acaaaatcgtgtga-gacgacgaaatcacaaaaacaaacgaaaga 50107957  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 7861219 - 7861247
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaa 43  Q
    |||||||||||||||||||||||||||||    
T  7861219 agacgacgaaatcacaaaaacaaatgaaa 7861247  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 42197662 - 42197634
Alignment:
Q  15 agacgacgaaatcacaaaaacaaatgaaa 43  Q
    |||||||||||||||||||||||||||||    
T  42197662 agacgacgaaatcacaaaaacaaatgaaa 42197634  T

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