View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12661_high_1 (Length: 762)

Name: NF12661_high_1
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12661_high_1
NF12661_high_1
[»] chr4 (1 HSPs)
chr4 (1-747)||(53788277-53789015)


Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 747
Target Start/End: Original strand, 53788277 - 53789015
Alignment:
Q  1 taagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctaagaaaacgtggtgagtaatggtacccactcactc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  53788277 taagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctgagaaaccgtggtgagtaatggtacccactcactc 53788376  T
Q  101 tatctttgctatgatgtgaagtgtgagaaccggggatcccaatataagtgagtcgaacaccacactttaacataaaaccttaagatattgaattttatgg 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||    
T  53788377 tatctttgctatgatgtgaagtgtgagaaccgggaatcccaatataagtgagtccaacaccacactttaacctaaaaccttaagatattggattt-atgg 53788475  T
Q  201 atcctataatttataaaattcaatccccannnnnnnaagtaaggtgaaacttttaattcacactttctacacaacaatcttcgtctcatgtataaatata 300  Q
     ||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  53788476 gtcctataatttataaaattcaatccccatttttctaagtaacgtgaaacttttaattcacactttctacacaacaatcttcttctcatgtgtaaatata 53788575  T
Q  301 agtatgtcaattcattatgctatcactcaaggaagttttttcatttacatacacttacttgcatcgttggtgtgacattcagcagagcacgccgtcaaaa 400  Q
    |||||||||||||||||||||  |||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||    
T  53788576 agtatgtcaattcattatgctcccacttaaggaagttttttcatctacatacacttacttgcaccgttggtgtgacattcagtggagcacgccatcaaaa 53788675  T
Q  401 cacattgatagaaagactttcaacacaaa-aaccgatcaaattcttattaaatcatgatgtaagataccacctttgtgtcaagatggggagtccggagga 499  Q
    |||  |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||    
T  53788676 cactgtgatagaaagactttcaacacaaagaaccgatcaaattcttattaaatcatcatgtaagataccacctttgcaaaaagatggggagtccggagga 53788775  T
Q  500 tcatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggcctttttgtatgattcatcaataccatactatgtc 599  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53788776 ttatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggcctttttgtatgattcatcaataccataccatgtc 53788875  T
Q  600 atttgattgtcgtcttctttttattctattattccaatatacttctctcattcatttcataataccactagttgcaacaaactataggctatagctaata 699  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||       ||||||||||||    
T  53788876 atttgattgtcgtcttctttttattctattattccactatacttctctcattcatttcataataccacaagtcgcaacaaa-------ctatagctaata 53788968  T
Q  700 ataaattacatatacaattatacattcttataacatttccgtatctga 747  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  53788969 ataaattacatatacaattatacattcttataacattt-cgtatctga 53789015  T

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