View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12661_high_10 (Length: 435)
Name: NF12661_high_10
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 18185288 - 18184998
Alignment:
| Q |
9 |
tttctttccctcataggggttacaactgaaaataaaatgtacccttcagatggagcaatcctgccctcggcatgttccatgtcattggccataagaaatc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18185288 |
tttctttccctcataggggttacaactgaaaataaaatgtacccttcggatggagcaatcctgccctcggcatgttccatgtcattggccataagaaatc |
18185189 |
T |
|
| Q |
109 |
aatcaacactcgaacctactgatatttcaaacagctacaatgatcaaaagcatgtgcgcgagagggttactttgacagaaacttatacatggatactaca |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18185188 |
aatcaacactcgaacccactgatatttcaaacagctacaatgatcaaaagcatgtgcgcgagagggttac-ttgacagaaacttatacatggatactaca |
18185090 |
T |
|
| Q |
209 |
atgatcaaacaattaaaacattatgcatgatacatattatgctagataaataaaaacaaaaacagaatgaaaatgctataagagaatagcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18185089 |
atgatcaaacaattaaaacattatgcatgatacatattatgctagataaataaaaacaaaaacagaatgaaaatgctataagaaaatagcat |
18184998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 299 - 414
Target Start/End: Complemental strand, 39027003 - 39026888
Alignment:
| Q |
299 |
atgcaataataccttttctaggtttttcttgtttcctgcattcaaatgagcaaaaccttcatcatttgcagtatcagatgtagatgtaatattctgattt |
398 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39027003 |
atgcaataataccttttctagatttttcttgtttactgcattcaaatgagcagaaccttcatcatttgcagtatcagatgtagatgtagaattctgattt |
39026904 |
T |
|
| Q |
399 |
ccctccaagtccttac |
414 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39026903 |
ccctccaagtccttac |
39026888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 39031669 - 39031589
Alignment:
| Q |
305 |
taataccttttctaggtttttcttgtttcctgcattcaaatgagcaaaaccttcatcatttgcagtatcagatgtagatgt |
385 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| ||||||||| || ||| |||||| |||||| |||||||||||| |
|
|
| T |
39031669 |
taataccttttctagatttttcttgtttactgcattgaaatgagcagaattttcgtcattttcagtattagatgtagatgt |
39031589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University