View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12661_high_14 (Length: 409)
Name: NF12661_high_14
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_14 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 24455559 - 24455898
Alignment:
| Q |
20 |
gggataaaggttggtaagaatgctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcattaccattttggccccaataga |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455559 |
gggataaaggttggtaagaaagctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcattaccattttggccccaataga |
24455658 |
T |
|
| Q |
120 |
ttacaattttgccagcatttgaacaatttgccaatgctaacatgactaatgagagggttaagattgagaatagaaatcttagtgccattgctgatttgga |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455659 |
ttacaattttgccagcatttgaacaatttgctaatcctaacatgactaatgagagggttaagattgagaatagaaatcttagtgccattgctgatttgga |
24455758 |
T |
|
| Q |
220 |
ataaattttagactaagaagtgttggtggagaatggcttttataaagttcatatgtcacaaacctctttaaaactttggagttttcctcataaaaacgta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455759 |
ataaattttagactaagaagtgttggtggagaatggcttttataaagttcatatgtcacaaacctctttaaaactttggagttttcctcataaaaacgta |
24455858 |
T |
|
| Q |
320 |
gcttggcagtcactttatgtaaaatattttatcaaattct |
359 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24455859 |
gcttggcaatcactttatgtaaaatattttatcaaattct |
24455898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 24367939 - 24368074
Alignment:
| Q |
26 |
aaggttggtaagaatgctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcattaccattttggccccaatagattacaa |
125 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||| ||| || || || || |||||||| |||||| ||| |
|
|
| T |
24367939 |
aaggtcggtaagaaggctatgatcacatattcatagtttcctgtggcacaagcctcagctaacgtgccctcgtttccgttctggccccagtagattgcaa |
24368038 |
T |
|
| Q |
126 |
ttttgccagcatttgaacaatttgccaatgctaaca |
161 |
Q |
| |
|
|||| || ||||| |||| ||| || | |||||||| |
|
|
| T |
24368039 |
tttttcctgcattagaaccattcgctagtgctaaca |
24368074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Original strand, 24455915 - 24455956
Alignment:
| Q |
358 |
cttactaatttatcaatcaattggcattatttctcacctatg |
399 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24455915 |
cttactaatttaccaatcaattggcattatttctcacctatg |
24455956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 148457 - 148310
Alignment:
| Q |
26 |
aaggttggtaagaatgctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcattaccattttggccccaatagattacaa |
125 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| | ||||||||||| |||||||||| ||| || || ||||| ||||||||||| ||| || |
|
|
| T |
148457 |
aaggttggtaagaaggctatgatcacatattcgtagttccctgtggcacaagcctcggctaacgtgccctcgtttccattctggccccaataaattgaaa |
148358 |
T |
|
| Q |
126 |
ttttgccagcatttgaacaatttgccaatgctaacatgactaatgaga |
173 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||| |||||||| |||| |
|
|
| T |
148357 |
ttttgccagcattagaatcatttgccagtgctaaaatgactaaggaga |
148310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University