View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_2 (Length: 651)
Name: NF12661_high_2
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 13 - 630
Target Start/End: Complemental strand, 35206528 - 35205911
Alignment:
| Q |
13 |
agcagagatgttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatac |
112 |
Q |
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| T |
35206528 |
agcagagatgttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatac |
35206429 |
T |
|
| Q |
113 |
aacagaacctcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaagactcatttccactgagctttttcccaacacagcac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35206428 |
aacagaacctcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaagactcatttccactgagctttttcccaacacagcac |
35206329 |
T |
|
| Q |
213 |
ttaaaacacttatccaacagttctgttatgataacaaaatttcagtttcaacatccaagctccacatcagcaaacctgcagccacggttaatcccggtag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35206328 |
ttaaaacacttatccaacagttctgttatgataacaaaatttcagtttcaacatccaagctccacatcagcaaacctgcatccacggttaatcccggtag |
35206229 |
T |
|
| Q |
313 |
tccagctgcagcacatgcgatacaattcacgtcatggtcattagctcggagactagttttcggaacagaggaacagaaaaataaagcagcttatgagatt |
412 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35206228 |
tccagctgcagcacatgcaatacaattcacgtcatggtcattagcccggagactagttttcggaacagaggaacagaaaaacaaagcagcttatgagatt |
35206129 |
T |
|
| Q |
413 |
catttactcgcgaaatcaaatgttttcaacacggcatgtttggttgaaattggaactgtgccaccgttgattgatcttgttctaacttcaacaacgcaag |
512 |
Q |
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| T |
35206128 |
cgtttactcgcgaaatcaaatgttttcaacacggcatgtttggttgaaattggaactgtgccaccgttgattgatcttgttctaacttcaacaacgcaag |
35206029 |
T |
|
| Q |
513 |
agaacgcaattgctgctcttttgaagctttcgaagcatactaatggccgcgaagttatcatggagagtagaggtttaaaacctattgttacagttctcag |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35206028 |
agaacgcaattgctgctcttttgaagctttcgaagcatactaatggccgcgaagttatcatggagagtagaggtttaaaacctattgttacagttctcag |
35205929 |
T |
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| Q |
613 |
aaaaggatttagtttaga |
630 |
Q |
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| T |
35205928 |
aaaaggatttagtttaga |
35205911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 43985869 - 43985827
Alignment:
| Q |
371 |
ttcggaacagaggaacagaaaaataaagcagcttatgagattc |
413 |
Q |
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| T |
43985869 |
ttcggaacagagcaacagaagaataaagcagcttacgagattc |
43985827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 43986190 - 43986069
Alignment:
| Q |
50 |
cgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaa |
149 |
Q |
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|||||||| ||||| || ||||||||||| ||||| ||||| ||||| || || ||||| ||| | | | |||||||| | |||| |||||||||||| |
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| T |
43986190 |
cgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagcaggaa |
43986091 |
T |
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| Q |
150 |
acatgacatgtccaaaaacagg |
171 |
Q |
| |
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||| ||||| || |||||||| |
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| T |
43986090 |
acaaaacatgccctaaaacagg |
43986069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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