View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_21 (Length: 326)
Name: NF12661_high_21
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 175 - 316
Target Start/End: Complemental strand, 25593066 - 25592925
Alignment:
| Q |
175 |
aaaagttagaaacagcacaagaaagagaggtactggttggcacttactggaaaatgggaaagtgaaaaccgttttggccttttgggagttaaagctagcg |
274 |
Q |
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| T |
25593066 |
aaaagttagaaacagcagaagaaagagaagtactggttggcacttactggaaaatgggaaggtgaaaaccgttttggccttttgggagttaaagctggcg |
25592967 |
T |
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| Q |
275 |
agagtgaagcatacaccattttcttccaccacctcatctctg |
316 |
Q |
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| T |
25592966 |
agagtgaagcatacaccattttcttccaccacctcatctctg |
25592925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 25593119 - 25593066
Alignment:
| Q |
93 |
atgttgtagtgggcgaaggcctgaaattcaatttgctagggagattcttgcata |
146 |
Q |
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| T |
25593119 |
atgttgtagtgggcgaaggcctgaaattcaatttgctagggaaattcttgcata |
25593066 |
T |
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