View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12661_high_25 (Length: 297)

Name: NF12661_high_25
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12661_high_25
NF12661_high_25
[»] chr7 (8 HSPs)
chr7 (19-160)||(27257288-27257429)
chr7 (19-161)||(40864280-40864424)
chr7 (82-161)||(40863959-40864038)
chr7 (27-160)||(9649844-9649980)
chr7 (96-160)||(11016794-11016858)
chr7 (19-130)||(23866792-23866902)
chr7 (14-48)||(9010410-9010444)
chr7 (18-57)||(19641358-19641397)
[»] chr5 (16 HSPs)
chr5 (19-161)||(21322920-21323062)
chr5 (19-160)||(31732620-31732760)
chr5 (19-125)||(13300405-13300511)
chr5 (23-163)||(24435061-24435199)
chr5 (19-161)||(562535-562678)
chr5 (19-161)||(557763-557908)
chr5 (19-130)||(41997709-41997822)
chr5 (31-143)||(2452036-2452149)
chr5 (82-145)||(8041158-8041221)
chr5 (19-160)||(12044014-12044159)
chr5 (19-161)||(36941146-36941291)
chr5 (19-130)||(32460459-32460572)
chr5 (82-143)||(36949819-36949880)
chr5 (19-161)||(42002500-42002646)
chr5 (19-160)||(36936393-36936537)
chr5 (19-165)||(3666943-3667088)
[»] chr4 (7 HSPs)
chr4 (19-160)||(3992653-3992794)
chr4 (24-161)||(7899837-7899973)
chr4 (19-161)||(34561476-34561618)
chr4 (19-145)||(41817854-41817980)
chr4 (27-160)||(13520869-13521005)
chr4 (19-159)||(31297409-31297552)
chr4 (19-74)||(39320633-39320688)
[»] chr2 (6 HSPs)
chr2 (19-160)||(6296796-6296937)
chr2 (23-140)||(28856159-28856276)
chr2 (19-161)||(10159600-10159744)
chr2 (82-145)||(17329278-17329341)
chr2 (19-74)||(30659211-30659265)
chr2 (19-48)||(19588682-19588711)
[»] scaffold0041 (1 HSPs)
scaffold0041 (19-160)||(34605-34746)
[»] scaffold0070 (2 HSPs)
scaffold0070 (19-161)||(59477-59618)
scaffold0070 (19-161)||(63679-63820)
[»] chr3 (11 HSPs)
chr3 (19-160)||(10585066-10585206)
chr3 (19-161)||(8070746-8070889)
chr3 (19-164)||(3034711-3034859)
chr3 (93-161)||(45903238-45903306)
chr3 (83-161)||(632069-632147)
chr3 (19-130)||(8884237-8884350)
chr3 (19-161)||(3673633-3673778)
chr3 (19-130)||(8888983-8889096)
chr3 (22-102)||(45903518-45903598)
chr3 (19-161)||(3693687-3693832)
chr3 (19-49)||(632003-632033)
[»] chr8 (10 HSPs)
chr8 (19-161)||(8330261-8330403)
chr8 (19-160)||(37772785-37772928)
chr8 (23-142)||(25361624-25361742)
chr8 (19-160)||(34817620-34817763)
chr8 (39-161)||(21959473-21959595)
chr8 (19-130)||(43301658-43301771)
chr8 (19-160)||(31448747-31448892)
chr8 (19-161)||(4241962-4242107)
chr8 (19-160)||(4237224-4237368)
chr8 (116-161)||(25361577-25361622)
[»] chr6 (1 HSPs)
chr6 (21-160)||(6111615-6111755)
[»] scaffold0060 (2 HSPs)
scaffold0060 (19-161)||(51795-51937)
scaffold0060 (19-160)||(46857-46994)
[»] scaffold0061 (1 HSPs)
scaffold0061 (32-161)||(48841-48970)
[»] scaffold0017 (1 HSPs)
scaffold0017 (32-161)||(149664-149793)
[»] chr1 (4 HSPs)
chr1 (19-160)||(41096835-41096974)
chr1 (19-162)||(33055850-33055993)
chr1 (19-164)||(3095156-3095304)
chr1 (19-111)||(40232321-40232414)
[»] scaffold0484 (2 HSPs)
scaffold0484 (23-142)||(7988-8106)
scaffold0484 (116-161)||(8108-8153)
[»] scaffold0015 (1 HSPs)
scaffold0015 (39-161)||(213253-213375)
[»] scaffold0182 (1 HSPs)
scaffold0182 (19-160)||(8764-8909)
[»] scaffold0045 (1 HSPs)
scaffold0045 (19-130)||(83975-84088)
[»] scaffold0628 (1 HSPs)
scaffold0628 (82-161)||(5798-5878)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 27257288 - 27257429
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
27257288 acacccccactatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 27257387  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
27257388 ttgtgtttagtcaattactcaatttccacatatgttccaaca 27257429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 40864424 - 40864280
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn--caattcacactacactagttctacccattatggaa 116  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| | |||||||||         ||||||||||||||||||||||||||||| ||| |    
40864424 acacctccactatataaacactactaatgtgtgatccatccgatctgggacttccatttttttttcaattcacactacactagttctacccattgtggga 40864325  T
117 atttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
40864324 atttgtgtttagtcaattactcaatttccacatatgttccaacaa 40864280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 40864038 - 40863959
Alignment:
82 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||    
40864038 caattcacactacactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacaa 40863959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 9649980 - 9649844
Alignment:
27 actatataaacactactaatgtgtga--ttcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgt 124  Q
    |||||||||||||||||||||||||   |||||| ||||| | |||||||       |||||||||| ||||||||||||||||  |||| |||||||||    
9649980 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgt 9649881  T
125 ttagtcaatt-actcaatttcctcgtatgttccaaca 160  Q
    ||||||  || ||||||||||| |  |||||||||||    
9649880 ttagtcttttaactcaatttccacacatgttccaaca 9649844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 11016858 - 11016794
Alignment:
96 ctagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||| |  |||||||||||    
11016858 ctagttctacctattatgggaatttgtatttagtcaattactcaatttccacacatgttccaaca 11016794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 23866792 - 23866902
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn-caattcacactacactagttctacccattatggaaa 117  Q
    ||||||||| ||||||||||||||||||||||  | ||||  |||| |||||||||        |||||||||| ||||||||||||||||  |||| ||    
23866792 acacccccattatataaacactactaatgtgt--tccatccaatgtgggacttccactttttttcaattcacacaacactagttctacccaacatgggaa 23866889  T
118 tttgtgtttagtc 130  Q
    |||||||||||||    
23866890 tttgtgtttagtc 23866902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 9010410 - 9010444
Alignment:
14 tcatcacacccccactatataaacactactaatgt 48  Q
    |||||||||||||||||||||||||||||||||||    
9010410 tcatcacacccccactatataaacactactaatgt 9010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 19641358 - 19641397
Alignment:
18 cacacccccactatataaacactactaatgtgtgattcat 57  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
19641358 cacacccccgctatataaacactactaatatgtgattcat 19641397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 21323062 - 21322920
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
21323062 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 21322963  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
21322962 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 21322920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 31732620 - 31732760
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||       ||||||||||||||||||||||| ||||| ||| |||    
31732620 acacccccactatataaacactactaatgtgtgatccatc-gatgtgggacttccatttttttcaattcacactacactagttctatccattgtgggaat 31732718  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
31732719 ttgtgtttagtcaattactcaatttccacatatgttccaaca 31732760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 13300511 - 13300405
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
13300511 acacccccactatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 13300412  T
119 ttgtgtt 125  Q
    |||||||    
13300411 ttgtgtt 13300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 24435199 - 24435061
Alignment:
23 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgt 122  Q
    ||||| ||||||||||||||||||||||||| |||  || ||  |||||||        ||||||||||||||||||||||||||||| ||| |||||||    
24435199 ccccattatataaacactactaatgtgtgatccattcgaagtgagacttcc--ttttttcaattcacactacactagttctacccattgtgggaatttgt 24435102  T
123 gtttagtcaattactcaatttcctcgtatgttccaacaaaa 163  Q
    ||||||||||||||||||||||| | |||||||||||||||    
24435101 gtttagtcaattactcaatttccacatatgttccaacaaaa 24435061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 562535 - 562678
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |||    
562535 acacccccactatataaacactactaatgtgtgttccatccgatgtgggacttcca-ctttttcaattcacacaacactagttctacccaacatgggaat 562633  T
119 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
562634 ttgtgtttagtctttttaactcaatttccacacatgttccaacaa 562678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 557763 - 557908
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
557763 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 557861  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
557862 atttgtgtttagtctttttaactcaatttccacacatgttccaacaa 557908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 41997709 - 41997822
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    ||||||||| |||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
41997709 acacccccaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatggga 41997808  T
117 atttgtgtttagtc 130  Q
    ||||||||||||||    
41997809 atttgtgtttagtc 41997822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 2452036 - 2452149
Alignment:
31 tataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn-caattcacactacactagttctacccattatggaaatttgtgtttagt 129  Q
    ||||||||||||||||||||||| |||| ||| |  ||||||||        ||||||| |||||| || |||||||| |||||| ||||||||||||||    
2452036 tataaacactactaatgtgtgatccatccgatatgagacttccactttttttcaattcatactacattaattctacccgttatgggaatttgtgtttagt 2452135  T
130 caattactcaattt 143  Q
    ||||||||||||||    
2452136 caattactcaattt 2452149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 8041221 - 8041158
Alignment:
82 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcc 145  Q
    |||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||||||||||||||    
8041221 caattcacactatactagttgtacccactatggaattttgtatttagtcaattactcaatttcc 8041158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 12044159 - 12044014
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||  |||||| ||       |||||||||| ||||||||||||||||  |||| |    
12044159 acacccccactatataaacactactaatgtgtgtgttccatccgatgagggactttcacttttttcaattcacacaacactagttctacccaacatggga 12044060  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
12044059 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 12044014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 36941291 - 36941146
Alignment:
19 acacccccactatataaacactactaatg--tgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||  |||| | |||| ||||| |||||||||       |||||||||  ||||||||||||||||  |||| |    
36941291 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca-ctttttcaattcacagaacactagttctacccaacatggga 36941193  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
36941192 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 36941146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 32460572 - 32460459
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| | |||||||       |||||||||| ||||||||||||||||  |||| |    
32460572 acacccccactatataaacactactaatgtgtgtgttccatccgatgtggtacttccacttttttcaattcacacaacactagttctacccaacatggga 32460473  T
117 atttgtgtttagtc 130  Q
    ||||||| ||||||    
32460472 atttgtgattagtc 32460459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 36949819 - 36949880
Alignment:
82 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaattt 143  Q
    |||||||||||||||||||||  || ||||||  |||||||||||||| |||||||||||||    
36949819 caattcacactacactagttccgcctattatgagaatttgtgtttagttaattactcaattt 36949880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 42002500 - 42002646
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||| || |||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  ||   |    
42002500 acaccctcaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatatga 42002599  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
42002600 atttgtgtttagtctttttaactcaatttccacacatgttccaacaa 42002646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 36936537 - 36936393
Alignment:
19 acacccccactatataaacactactaatg--tgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    ||||||| |||||||||||||||||||||  |||| | |||  |||||  ||||||||       |||||||||| ||||||||||||||||  |||| |    
36936537 acacccctactatataaacactactaatgtgtgtgttccattcgatgtgagacttcca-ctgtttcaattcacacaacactagttctacccaacatggga 36936439  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
36936438 atttgtgtttagtctgtttaactcaatttccacacatgttccaaca 36936393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 3666943 - 3667088
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||  |||||||||||||  || | |||| ||||| |||||||||       ||||| |||| |||||| |||||| ||  ||| ||||    
3666943 acacccccactata--aacactactaatgcttgttccatccgatgtgggacttccacctttttcaatttacacaacactatttctacacaacatgaaaat 3667040  T
119 ttgtgtttagtc-aattactcaatttcctcgtatgttccaacaaaaac 165  Q
    ||||||||||||   ||||||||||||| |  ||||||||||| ||||    
3667041 ttgtgtttagtctttttactcaatttccacacatgttccaacataaac 3667088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 3992794 - 3992653
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||       |||||||||| |||||||||||||||||| ||| |||    
3992794 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttccacctttttcaattcacaccacactagttctacccattgtgggaat 3992695  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
3992694 ttgtgtttagtcaattactcaatttccgcatatgttccaaca 3992653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 7899973 - 7899837
Alignment:
24 cccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtg 123  Q
    |||||||||||||||||||||||||||||| ||| |||||| |||||||||       |||||||||| |||||||||||||||||| ||| ||||||||    
7899973 cccactatataaacactactaatgtgtgatccat-tgatgtgggacttccacttttttcaattcacaccacactagttctacccattgtgggaatttgtg 7899875  T
124 tttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    |||||||||||||||||||||| | |||||||||||||    
7899874 tttagtcaattactcaatttccacatatgttccaacaa 7899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 34561476 - 34561618
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    |||||||||||||||||| |||||||||||||||| |||| || || |||||||||       |||||||||||| |||| ||||||||||||| | |||    
34561476 acacccccactatataaatactactaatgtgtgatccatccgacgtgggacttccacttttttcaattcacactatactaattctacccattataggaat 34561575  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||||||||||||||| |  ||||||||||||    
34561576 ttgtgtttagtcaattactcaatttccacaaatgttccaacaa 34561618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 41817854 - 41817980
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||| | |||||||       |||||||||||||| || ||||||||||| | | |||    
41817854 acacccccactatataaacactactaatatgtgatccatccgatgtggaacttccacttttttcaattcacactacattaattctacccattgtaggaat 41817953  T
119 ttgtgtttagtcaattactcaatttcc 145  Q
    ||||||||| |||||||||||||||||    
41817954 ttgtgtttaatcaattactcaatttcc 41817980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 13521005 - 13520869
Alignment:
27 actatataaacactactaatgtgtga--ttcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgt 124  Q
    |||||||||||||||||||||||||   |||||| ||||| | |||||||       |||||||||| ||||||||||||||||  |||| |||||||||    
13521005 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgt 13520906  T
125 ttagtcaatt-actcaatttcctcgtatgttccaaca 160  Q
    ||||||  || ||||||||||| |  |||||||||||    
13520905 ttagtcttttaactcaatttccacacatgttccaaca 13520869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 31297552 - 31297409
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||| ||| ||||||||  |  |||| ||||||| |||||||       |||||||||| ||||||||||||||||  |||  |    
31297552 acacccccactatataaacattacaaatgtgtgtgttccatccgatgtagaacttccacttttt-caattcacacaacactagttctacccaacatgaga 31297454  T
117 atttgtgtttag--tcaattactcaatttcctcgtatgttccaac 159  Q
    ||||||||||||  |   ||||||||||||| || ||||||||||    
31297453 atttgtgtttagccttttttactcaatttccacgcatgttccaac 31297409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 39320633 - 39320688
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttcca 74  Q
    |||||||||||||||||||| ||||||||||||||  |||  |||||| |||||||    
39320633 acacccccactatataaacattactaatgtgtgatctatccaatgtagaacttcca 39320688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 6296937 - 6296796
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||       ||||||||||||||||||||||||||||| ||| |||    
6296937 acacccccactatataaacactactaatgtgtgatccatccgatgtgggtcttccacttttttcaattcacactacactagttctacccattgtgggaat 6296838  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
6296837 ttgtgtttagtcaattactcaatttccacatatgttccaaca 6296796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 28856159 - 28856276
Alignment:
23 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgt 122  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||||||       |||||||||||||| |||||||||||||| ||  ||||| |    
28856159 ccccaccatataaacactactaatgtgtgatccatctgatgtgggacttccacttttttcaattcacactacattagttctacccattgtgtgaatttat 28856258  T
123 gtttagtcaattactcaa 140  Q
    ||||||||||||||||||    
28856259 gtttagtcaattactcaa 28856276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 10159744 - 10159600
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    |||||||||||||||||||||||||||| |||| | |||| ||||| |||||||||       |||||||||| |||||||||||||| |  |||| |||    
10159744 acacccccactatataaacactactaatatgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacctaacatgggaat 10159645  T
119 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
10159644 ttgtgtttagtctttttaactcaatttccacagatgttccaacaa 10159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 17329278 - 17329341
Alignment:
82 caattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcc 145  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
17329278 caattcacattacaatagttctacccattatggaaatttatgtttagtcaattactcaatttcc 17329341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 30659211 - 30659265
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttcca 74  Q
    |||||||||||||||||||||||||||||| || | |||| ||||| |||||||||    
30659211 acacccccactatataaacactactaatgt-tgttccatccgatgtgggacttcca 30659265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 19588711 - 19588682
Alignment:
19 acacccccactatataaacactactaatgt 48  Q
    ||||||||||||||||||||||||||||||    
19588711 acacccccactatataaacactactaatgt 19588682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 34746 - 34605
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||| ||||||||||| |||  ||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
34746 acacccccactatataaacactattaatgtgtgatccatacgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaat 34647  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
34646 ttgtgtttagtcaattactcaatttccacatatgttccaaca 34605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 59477 - 59618
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||| ||| |||||       ||||||||||||||||||||||||||||| ||| |||    
59477 acacccccactatataaacattactaatgtgtgatccatccgatgtgggatttccacttttt-caattcacactacactagttctacccattgtgggaat 59575  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
59576 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 59618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 63679 - 63820
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||| ||| |||||       ||||||||||||||||||||||||||||| ||| |||    
63679 acacccccactatataaacattactaatgtgtgatccatccgatgtgggatttccacttttt-caattcacactacactagttctacccattgtgggaat 63777  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
63778 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 63820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 10585206 - 10585066
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||       ||||||||||||||||||||||||||||| ||| |||    
10585206 acacccccactatataaacactactaatgtgtgatccatccgatgtgggacttccacttttt-caattcacactacactagttctacccattgtgggaat 10585108  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||||||||||||| | | |||| |||||||    
10585107 ttgtgtttagtcaattactcaattttcacatatgctccaaca 10585066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 8070746 - 8070889
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |||    
8070746 acacccccactatataaacactactaatgtgtgttccatccgatgtgggacttcca-ttttttcaattcacacaacactagttctacccaacatgggaat 8070844  T
119 ttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||  ||  ||||||||||| |  ||||||||||||    
8070845 ttgtgtttagtctttttaactcaatttccacacatgttccaacaa 8070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 3034711 - 3034859
Alignment:
19 acacccccactatataaacactactaatgtgtg-attc-atctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
3034711 acacccccactatataaacactactaatgtgtgtattccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 3034809  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaaaaa 164  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||||||    
3034810 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaaaaa 3034859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 45903306 - 45903238
Alignment:
93 acactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||    
45903306 acactagttctacccattgtgggaatttgtgtttagtcaattactcaatttccacatatgttccaacaa 45903238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 632069 - 632147
Alignment:
83 aattcacactacactagttctacccattatggaaatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| | | |||||||||||||    
632069 aattcacactaaactagttttacccattgtgaaaatttgtgtttagtcaattactcaattttcacatatgttccaacaa 632147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 8884237 - 8884350
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
8884237 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccatttttttcaattcacacaacactagttctacccaacatggga 8884336  T
117 atttgtgtttagtc 130  Q
    ||||||||||||||    
8884337 atttgtgtttagtc 8884350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 3673633 - 3673778
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
3673633 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 3673731  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
3673732 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 3673778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 8888983 - 8889096
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| |||||| |||||||||  |||| |    
8888983 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactaattctacccaacatggga 8889082  T
117 atttgtgtttagtc 130  Q
    ||||||||||||||    
8889083 atttgtgtttagtc 8889096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 45903598 - 45903518
Alignment:
22 cccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttc 102  Q
    ||||||||||||||||||||||||||||||||  ||| |||||  ||||||||       |||||||||||||||||||||    
45903598 cccccactatataaacactactaatgtgtgatctatccgatgtgagacttccaattttttcaattcacactacactagttc 45903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 3693687 - 3693832
Alignment:
19 acacccccactatataaacactactaa--tgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||  |||||| | |||| ||||| |||||||||       |||||||||| ||| ||||||||||||  |||  |    
3693687 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttcca-ctttttcaattcacacaacattagttctacccaacatgaga 3693785  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
3693786 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 3693832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 632003 - 632033
Alignment:
19 acacccccactatataaacactactaatgtg 49  Q
    |||||||||||||||||||||||||||||||    
632003 acacccccactatataaacactactaatgtg 632033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 8330403 - 8330261
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||| |||||| ||       ||||||||||||  ||||||||||||||| ||| |||    
8330403 acacccctactatataaacactactaatgtgtgatccatccgatgtgggactttcacttttttcaattcacactatgctagttctacccattgtgggaat 8330304  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
8330303 ttgtgtttagtcaattactcaatttccacatatgttccaacaa 8330261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 37772785 - 37772928
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn---caattcacactacactagttctacccattatgga 115  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||          ||||||||||||||||||||||||||||| |||     
37772785 acacccccactatataaacactactaatgtgtgatccatc-gatgtgggacttccattttttttttcaattcacactacactagttctacccattgtggg 37772883  T
116 aatttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
37772884 aatttgtgtttagtcaattactcaatttccacatatgttccaaca 37772928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 25361742 - 25361624
Alignment:
23 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgt 122  Q
    |||||||||||||| |||||||||||||||| |||| ||||| |||||||||       ||||||||||||||||||||||||||||||||| |||||||    
25361742 ccccactatataaatactactaatgtgtgatccatccgatgtgggacttccacttttt-caattcacactacactagttctacccattatgggaatttgt 25361644  T
123 gtttagtcaattactcaatt 142  Q
    |||||||| |||||||||||    
25361643 gtttagtccattactcaatt 25361624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 34817763 - 34817620
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn--caattcacactacactagttctacccattatggaa 116  Q
    |||| |||| ||||||||||||||||||||||||| |||| ||||||| |||||||         ||||| ||||||||||||||||| ||||| ||| |    
34817763 acactcccaatatataaacactactaatgtgtgatccatccgatgtagaacttccatttttttttcaatttacactacactagttctatccattgtggga 34817664  T
117 atttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||| ||||||||||||||| | | ||||||||||||    
34817663 atttgtgtttaatcaattactcaattttcacatatgttccaaca 34817620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 21959473 - 21959595
Alignment:
39 ctactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtcaattactc 138  Q
    ||||||||||||||| ||| ||||||  ||||||||       |||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||    
21959473 ctactaatgtgtgatccatttgatgtgagacttccacttttttcaattcacactacattaattctacccattgtgggaatttgtgtttagtcaattactc 21959572  T
139 aatttcctcgtatgttccaacaa 161  Q
    ||||||  | |||||||||||||    
21959573 aatttcaacatatgttccaacaa 21959595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 43301771 - 43301658
Alignment:
19 acacccccactatataaacactactaatgt--gtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    ||||||||||||||||||||||||||||||  ||| | |||| |||||||||||||||       |||||||||| ||||||||||||||||  ||||||    
43301771 acacccccactatataaacactactaatgtatgtgttccatccgatgtaggacttccacttttttcaattcacacaacactagttctacccaagatggaa 43301672  T
117 atttgtgtttagtc 130  Q
    ||||||||||||||    
43301671 atttgtgtttagtc 43301658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 31448892 - 31448747
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
31448892 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatggga 31448793  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
31448792 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 31448747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 4242107 - 4241962
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
4242107 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 4242009  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||  ||  ||||||||||| |  ||||||||||||    
4242008 atttgtgtttagtctgtttaactcaatttccacacatgttccaacaa 4241962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 4237368 - 4237224
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| |||||||||       |||||||||| ||||||||||||||||  |||| |    
4237368 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggga 4237270  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
4237269 atttgtgtttagtctgtttaactcaatttccacacatgttccaaca 4237224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 25361622 - 25361577
Alignment:
116 aatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||| |||||||||||||||||||||||| | |||||| ||||||    
25361622 aatttttgtttagtcaattactcaatttccacatatgttacaacaa 25361577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 6111755 - 6111615
Alignment:
21 acccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnn-caattcacactacactagttctacccattatggaaatt 119  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||| ||| |||||        ||||||||||||||||||||||||||||| ||| ||||    
6111755 accccgactatataaacactactaatgtgtaattcatccgatgtgggatttccattttttttcaattcacactacactagttctacccattgtgggaatt 6111656  T
120 tgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
6111655 tgtgtttagtcaattactcaatttccacgtatgttcaaaca 6111615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 51937 - 51795
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||| ||||||||||||||||||||||||||| |||| || ||  ||||||||       ||||||||||||||||| ||||||||||| ||| |||    
51937 acacccctactatataaacactactaatgtgtgatccatccgacgtgtgacttccacttttttcaattcacactacactaattctacccattgtgggaat 51838  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||||||||||||||||||||||| | | |||||||||||||    
51837 ttgtgtttagtcaattactcaattttcacatatgttccaacaa 51795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 46994 - 46857
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||| ||||||||||||||||||||||    | |||| ||||| |||||||||       ||||||||||||||||||||||||||||| || ||||    
46994 acacccctactatataaacactactaatgt----tccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgaaaat 46899  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||||||||||| ||| | ||||||||||||    
46898 ttgtgtttagtcaattactcaatctccacatatgttccaaca 46857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 48970 - 48841
Alignment:
32 ataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtca 131  Q
    |||||||||||||||||||||| |||| ||||| |||||||||       |||||||||||||||||||||| |||||| ||||||||||| ||||||||    
48970 ataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcttcccattgtggaaatttgtatttagtca 48871  T
132 attactcaatttcctcgtatgttccaacaa 161  Q
    | |||||||||||| | |||||||||||||    
48870 agtactcaatttccacatatgttccaacaa 48841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 149664 - 149793
Alignment:
32 ataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtca 131  Q
    |||||||||||||||||||||| |||| ||||| |||||||||       |||||||||||||||||||||| |||||| ||||||||||| ||||||||    
149664 ataaacactactaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcttcccattgtggaaatttgtatttagtca 149763  T
132 attactcaatttcctcgtatgttccaacaa 161  Q
    | |||||||||||| | |||||||||||||    
149764 agtactcaatttccacatatgttccaacaa 149793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 41096974 - 41096835
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||||||||||||||||||||| ||||||||||| |||  ||||| |||||||||        |||||||||||||||||||||||||||| |||||||    
41096974 acacccccactatataaacactaataatgtgtgatccatg-gatgtgggacttccattttttt-aattcacactacactagttctacccattgtggaaat 41096877  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||||||||||||||  | ||||||||||||    
41096876 ttgtgtttagtcaattactcaatttctacatatgttccaaca 41096835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 33055850 - 33055993
Alignment:
19 acacccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaat 118  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||       ||||||||||| |||||| |||||||||| ||| |||    
33055850 acacctccactatataaacactactaatgtgtgatccatccgatgtgggacttccatttttttcaattcacactgcactaggtctacccattgtgggaat 33055949  T
119 ttgtgtttagtcaattactcaatttcctcgtatgttccaacaaa 162  Q
    ||||| |||||||||||| |||||| | | ||||||||||||||    
33055950 ttgtgcttagtcaattacacaattttcacatatgttccaacaaa 33055993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 3095156 - 3095304
Alignment:
19 acacccccactatataaacactactaatgtgtga--ttcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||   |||||| ||||| |||||||||       |||||||||| ||||||||||||||||  ||||||    
3095156 acacccccactatataaacactactaatgtgtgtgtttcatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggaa 3095254  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaacaaaaa 164  Q
    |||||||||||||   ||  ||||||||||| |  |||||||||||||||    
3095255 atttgtgtttagtttgtttaactcaatttccacacatgttccaacaaaaa 3095304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 40232414 - 40232321
Alignment:
19 acacccccactatataaacactact-aatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccatta 111  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||       |||||||||||||| |||||||||||||||    
40232414 acacccccactatataaacactactaaatgtgtgatccatccgatgtgggacttccacttttttcaattcacactacattagttctacccatta 40232321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 7988 - 8106
Alignment:
23 ccccactatataaacactactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgt 122  Q
    |||||||||||||| || ||||||||||||| |||| ||||| |||||||||       |||||| |||||||||||||||||||||||||| |||||||    
7988 ccccactatataaataccactaatgtgtgatccatccgatgtgggacttccacttttt-caattctcactacactagttctacccattatgggaatttgt 8086  T
123 gtttagtcaattactcaatt 142  Q
    ||||||||||||||||||||    
8087 gtttagtcaattactcaatt 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 8108 - 8153
Alignment:
116 aatttgtgtttagtcaattactcaatttcctcgtatgttccaacaa 161  Q
    ||||| |||||||||||||||||||||||| | |||||| ||||||    
8108 aatttttgtttagtcaattactcaatttccacatatgttacaacaa 8153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 213375 - 213253
Alignment:
39 ctactaatgtgtgattcatctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaaatttgtgtttagtcaattactc 138  Q
    ||||||||||||||| ||| ||||||  ||||||||       |||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||    
213375 ctactaatgtgtgatccatttgatgtgagacttccacttttttcaattcacactacattaattctacccattgtgggaatttgtgtttagtcaattactc 213276  T
139 aatttcctcgtatgttccaacaa 161  Q
    ||||||  | |||||||||||||    
213275 aatttcaacatatgttccaacaa 213253  T

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Target: scaffold0182 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 8909 - 8764
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    |||||||||||||||||||||||||||||||||  |  |||| ||||| ||| |||||       |||||||||| ||||||||||||||||  |||| |    
8909 acacccccactatataaacactactaatgtgtgtgttccatccgatgtgggatttccacttttttcaattcacacaacactagttctacccaacatggga 8810  T
117 atttgtgtttagtcaatt--actcaatttcctcgtatgttccaaca 160  Q
    ||||||||||||||  ||  ||||||||||| |  |||||||||||    
8809 atttgtgtttagtctttttaactcaatttccacacatgttccaaca 8764  T

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Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 83975 - 84088
Alignment:
19 acacccccactatataaacactactaatgtgtgatt--catctgatgtaggacttccannnnnnncaattcacactacactagttctacccattatggaa 116  Q
    ||||| |||||||||||||||||||||||||||  |  |||   ||||||||||| ||       |||||||||| ||||||||||||||||  || |||    
83975 acacctccactatataaacactactaatgtgtgtgttccattcaatgtaggactttcactcttttcaattcacacaacactagttctacccaacatagaa 84074  T
117 atttgtgtttagtc 130  Q
    ||||||||||||||    
84075 atttgtgtttagtc 84088  T

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Target: scaffold0628 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 5798 - 5878
Alignment:
82 caattcacactacactagttctacccattatggaaatttgtgtttagtcaatt-actcaatttcctcgtatgttccaacaa 161  Q
    |||||||||| |||||||||||||| | ||||  ||||||||||||||   || ||||||||||| |  ||||||||||||    
5798 caattcacacaacactagttctaccaaatatgagaatttgtgtttagtattttaactcaatttccacacatgttccaacaa 5878  T

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