View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_27 (Length: 267)
Name: NF12661_high_27
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 46466345 - 46466573
Alignment:
| Q |
15 |
cttttcaccaccgtaatcgatccgttacgttcaatcttgcgacgatcacacagttcagaaatccctcctactctacctcgaaaacattgataaaaccgat |
114 |
Q |
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| T |
46466345 |
cttttcaccaccgtaatc----cgttacgttcaatcttgcgacgatcacacagttcagaaatccctccttctctacctcgaaaacattgataaaaccgat |
46466440 |
T |
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| Q |
115 |
tcaactggtaaacttctccctgaaatcatcctcattaca-aactctccttagcactcttcaatgccctctaacgaattcattcgcagtgttactcttcgt |
213 |
Q |
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| T |
46466441 |
tcaactggtaaacttctccctgaaatcatcctcattatacaactctccttagcaatcttcaatgcc--ctaacgaattcattcgcagtgttactcttcgt |
46466538 |
T |
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| Q |
214 |
tttctttgccgtatcaatgaatctgaaatccttga |
248 |
Q |
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| T |
46466539 |
tttctttgccgtatcaatgaatctgaaatccttga |
46466573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 1471273 - 1471385
Alignment:
| Q |
34 |
atccgttacgttcaatcttgcgacgatcacacagttcagaaatccctcctactctacctcgaaaacattgataaaaccgattcaactggtaaacttctcc |
133 |
Q |
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| T |
1471273 |
atccgttacgtcctcacttgcgacgatcacaccgttcaaaaactcctccttctttaccttgaaatcaccgataaaaccgattctcgcggtaaagttctcc |
1471372 |
T |
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| Q |
134 |
ctgaaatcatcct |
146 |
Q |
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| T |
1471373 |
ctgaaatgatcct |
1471385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 55203269 - 55203216
Alignment:
| Q |
182 |
ctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaat |
235 |
Q |
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| T |
55203269 |
ctaacgaattcatgcgcggtgtaactctccgttttcttagccgcatcaatgaat |
55203216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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