View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_29 (Length: 255)
Name: NF12661_high_29
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_29 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 8459347 - 8459115
Alignment:
| Q |
18 |
caaacatattcaatcaattattgttaaactcatgaaactttatatttgcaagatgttattaatgtccaaattggtccatatgttgcaacattattcaaga |
117 |
Q |
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| T |
8459347 |
caaacatattcaatcaattattgttaaactcatgaaactttatatttgcaagattttattaatgtccaaattgatccatatgttgcaacattattcaaga |
8459248 |
T |
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| Q |
118 |
aatagaaattataaaagagtaaatattcttcctcagnnnnnnnnnnnnnnnctacaagtattctaatgtctcaaaatatttgagataactaaaataatat |
217 |
Q |
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| T |
8459247 |
aatagaaattataaaagagtaaatattcttcctca-----aaaaaaaaaaactacaagtattctaatgtctcaaaatatttgagataactaaaataatat |
8459153 |
T |
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| Q |
218 |
cagcaactttctcaacatcatgagcatattttggaagc |
255 |
Q |
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| T |
8459152 |
cagcaactttctcaacatcatgagcatattttggaagc |
8459115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 73 - 255
Target Start/End: Complemental strand, 8463992 - 8463812
Alignment:
| Q |
73 |
ttattaatgtccaaattggtccatatgttgcaacattattcaagaaatagaaattataaaagagtaaatattcttcctcagnnnnnnnnnnnnnnnctac |
172 |
Q |
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| T |
8463992 |
ttattaatgtctagattgatccatatgttgcaacatcattcaacaaatacaaattataaatgagtaaatattcttcccta--aaaaagaaaaaaaactac |
8463895 |
T |
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| Q |
173 |
aagtattctaatgtctcaaaatatttgagataactaaaataatatcagcaactttctcaacatcatgagcatattttggaagc |
255 |
Q |
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| T |
8463894 |
aagtattctaatgtctcaaaatatttgagatagctaaaataatctcagcaactttctcaacatcatgagcatattttggaagc |
8463812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 8464029 - 8463992
Alignment:
| Q |
21 |
acatattcaatcaattattgttaaactcatgaaacttt |
58 |
Q |
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| T |
8464029 |
acatattcaatcaattattgtcaaactcatgaaacttt |
8463992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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