View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12661_high_3 (Length: 624)

Name: NF12661_high_3
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12661_high_3
NF12661_high_3
[»] chr2 (5 HSPs)
chr2 (15-288)||(8258558-8258834)
chr2 (424-624)||(8257964-8258165)
chr2 (321-412)||(8258223-8258313)
chr2 (289-329)||(8258496-8258536)
chr2 (67-153)||(13266789-13266875)
[»] chr7 (2 HSPs)
chr7 (67-171)||(32471261-32471366)
chr7 (291-342)||(29292189-29292240)
[»] chr8 (1 HSPs)
chr8 (289-346)||(11364481-11364538)
[»] chr6 (3 HSPs)
chr6 (71-170)||(6919337-6919437)
chr6 (295-342)||(13436839-13436886)
chr6 (312-348)||(6919630-6919666)
[»] chr4 (1 HSPs)
chr4 (295-343)||(23407668-23407716)
[»] chr5 (1 HSPs)
chr5 (295-342)||(42954804-42954851)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 8258834 - 8258558
Alignment:
Q  15 aaaggcagaaaagaaagacttcgttaannnnnnncatacccatcatagtttatctatttatgcacaattcaagctttcttgattttaggattactagcaa 114  Q
    |||| ||||||||||||||||| || |       ||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||||||    
T  8258834 aaagacagaaaagaaagacttcattcattttcttcatacccatcatagtttatctatttatccataattcaagcttcattgattttaggattactagcaa 8258735  T
Q  115 catcttcatttgtctcatcaataatattatgtcaagtgtattttctcatatac--tattgaatcgtcacatatatttccaacttttcgatatatttctcg 212  Q
    | |||||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||| |  ||||||||||||||||||| ||||||||||||    
T  8258734 cgtcttcatttgtctcatcaataatattatgtcaagtgtatttcatcatatactatattgaatcatgtcatatatttccaacttttcaatatatttctcg 8258635  T
Q  213 tcttttgtgacaatggaggttctaaagacatagtaatgcaatctcgtt-aaaaaattcttcaatatgcaactctaat 288  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  8258634 tcttttgtgacaatggaggttctaaagacatagtcatgcaatttcgttaaaaaaattcttcaatatgcaactctaat 8258558  T

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Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 424 - 624
Target Start/End: Complemental strand, 8258165 - 8257964
Alignment:
Q  424 ttcatcaatattcttgatttgaaaatcactagccacgcgttcatttacctcaactttcttgatttttaaaacactagc-atgtgtctatttaactcaacc 522  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||||| |||| |  ||||||||||||||||||    
T  8258165 ttcatcaatattcttgatttgaaaatcactagtcatgcgctcatttacatcaactttcttgatttttaaaacaatagccacatgtctatttaactcaacc 8258066  T
Q  523 aattatattatgtcaaatatatttccaatatatgcaattttaaatcgtaatatctaacacataatcatcgttttcgcgggacattactattgttctgtca 622  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  8258065 aaatatattatgtcaaatgtatttccaatatatgcaattttaaatcgtaatatctaaaacataatcatcgttttcgcgggacattactattgttctatca 8257966  T
Q  623 ac 624  Q
    ||    
T  8257965 ac 8257964  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 8258313 - 8258223
Alignment:
Q  321 ttaaatgaaaggtaaaattgatggatgataaccccaaataaacttgatgtttcttaatacatagtaaaggagaaaggaaaatatagaagttt 412  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8258313 ttaaataaaaggtaaaattgatggatgataaccccaaataaacttgatg-ttcttaatacatagtaaaggagaaaggaaaatatagaagttt 8258223  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 8258536 - 8258496
Alignment:
Q  289 aatgtgataaattgatgattgtgaattgattattaaatgaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8258536 aatgtgataaattgatgattgtgaattgattattaaatgaa 8258496  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 13266875 - 13266789
Alignment:
Q  67 tctatttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctcatcaataatattatgtcaagtgt 153  Q
    |||||||||||||||| ||||||| ||| ||||||  ||||||||| |||| | ||||| ||||  | |||| |||| |||||||||    
T  13266875 tctatttatgcacaatccaagcttccttaattttaaaattactagccacatgtccatttatctcgactataaaattacgtcaagtgt 13266789  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 32471261 - 32471366
Alignment:
Q  67 tctatttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctc-atcaataatattatgtcaagtgtattttctcatat 165  Q
    |||||||||||||||| ||||||| |||||||||||||| |||| | |||| | |||||| ||| | ||||||||||||| |||| |||||| |||||||    
T  32471261 tctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatattatgccaagcgtatttcctcatat 32471360  T
Q  166 actatt 171  Q
     |||||    
T  32471361 tctatt 32471366  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 29292189 - 29292240
Alignment:
Q  291 tgtgataaattgatgattgtgaattgattattaaatgaaaggtaaaattgat 342  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  29292189 tgtgataaattgataattgtgaattgattattaagtgaaaggtaaaattgat 29292240  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 11364481 - 11364538
Alignment:
Q  289 aatgtgataaattgatgattgtgaattgattattaaatgaaaggtaaaattgatggat 346  Q
    |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| ||||    
T  11364481 aatgtgataaattgataattgtaaattgtttattaaatcaaaggtaaaattgagggat 11364538  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 6919437 - 6919337
Alignment:
Q  71 tttatgcacaattcaagctttcttgattttaggattactagcaacatcttcatttgtctc-atcaataatattatgtcaagtgtattttctcatatacta 169  Q
    |||||||||||| ||| ||||||| ||||||| || |||||| |||| | |||||| ||| | |||| || ||||| ||||||||||||| ||||| |||    
T  6919437 tttatgcacaatccaaactttcttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgcta 6919338  T
Q  170 t 170  Q
    |    
T  6919337 t 6919337  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 13436886 - 13436839
Alignment:
Q  295 ataaattgatgattgtgaattgattattaaatgaaaggtaaaattgat 342  Q
    ||||| |||| |||||||||||||| | ||||||||||||||||||||    
T  13436886 ataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgat 13436839  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 6919666 - 6919630
Alignment:
Q  312 aattgattattaaatgaaaggtaaaattgatggatga 348  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  6919666 aattgattattaaatcaaaggtaaaatttatggatga 6919630  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 23407716 - 23407668
Alignment:
Q  295 ataaattgatgattgtgaattgattattaaatgaaaggtaaaattgatg 343  Q
    ||||| |||| |||||||||||||| | |||||||||||||||||||||    
T  23407716 ataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgatg 23407668  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 42954804 - 42954851
Alignment:
Q  295 ataaattgatgattgtgaattgattattaaatgaaaggtaaaattgat 342  Q
    ||||| |||| |||||||||||||| | ||||||||||||||||||||    
T  42954804 ataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgat 42954851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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