View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_32 (Length: 240)
Name: NF12661_high_32
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 24683495 - 24683301
Alignment:
| Q |
31 |
gagtgagctaatcaaggggaatacctgttcgaaaataaagtccgatcggaccaagacggaaagattcatacaaagaggggataagaagggatagcgcttc |
130 |
Q |
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| T |
24683495 |
gagtgagctaatcaaggggaatacctgttcgaaaataaagtccgatcggaccaagacggaaagattcatacaaagaggggataagaagggatagcgcttc |
24683396 |
T |
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| Q |
131 |
gatcagcatgaaataaggtaagacccgaagcgtatagtagaaactccttgagttaagcataaataagtaccccagaggctacgagaaagatctga |
225 |
Q |
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| T |
24683395 |
gatcagcatgaaataaggtaagacccgaagcgtatagtagaaactccttgagttaagcataaataagtaccccagaggctacgagaaagatctga |
24683301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 16060442 - 16060595
Alignment:
| Q |
72 |
ccgatcggaccaagacggaaagattcatacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtaga |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16060442 |
ccgatcggaccaagacggaaagattcatacaaagaggggataagaagggatagcgcttcgatcagcatgaaataaggtaagacccgaagcgtatagtaga |
16060541 |
T |
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| Q |
172 |
aactccttgagttaagcataaataagtaccccagaggctacgagaaagatctga |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16060542 |
aactccttgagttaagcataaataagtaccccagaggctacaagaaagatctga |
16060595 |
T |
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