View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_36 (Length: 216)
Name: NF12661_high_36
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 34040925 - 34041118
Alignment:
| Q |
12 |
agaagcagagagggaggttgacgatgttgactccaagttcaacttgcatcttccaccaggtgaagctggtgttgatgaaggacagtacagaaggccaaaa |
111 |
Q |
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| T |
34040925 |
agaatcagagagggaggttgacgatgttgactccaagttcaacttacattttccaccaggtgaagctggtgttgatg---gacagtacaaaaggccaaaa |
34041021 |
T |
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| Q |
112 |
aggaagtcaatgtatagcactttcagtaaggcaggtctgtgggaggtcgcaagcagatttgggtgtagttctgagcaactcggatgatgtccatctc |
208 |
Q |
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| T |
34041022 |
aggaagtcaatgtatagcactttcagtaaggcaggtctgtgggaggttgcaagcagatttgggtgtagttctgagcaactcggattatgtctatctc |
34041118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 34586044 - 34585848
Alignment:
| Q |
12 |
agaagcagagagggaggttgacgatgttgactccaagttcaacttgcatcttccaccaggtgaagctggtgttgatgaaggacagtacagaaggccaaaa |
111 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| | ||| | ||||| ||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
34586044 |
agaatcagagagggaggttgacgatgttgattccaagttcaatgtacatttcccacctggtgaagctggtgttgatgaaggacagtacaaaaggccgaaa |
34585945 |
T |
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| Q |
112 |
aggaagtcaatgtatagcactttcagtaaggcaggtctgtgggaggtcgcaagcagatttgggtgtagttctgagcaactcggatgatgtccatctc |
208 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
34585944 |
aggaagtcaatgtatagcactttcagtaaggcgggcctgtgggaggttgcaagcaggtttgggtgtagttctgagcaactcggattatgtctatctc |
34585848 |
T |
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