View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_4 (Length: 580)
Name: NF12661_high_4
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Complemental strand, 46145903 - 46145350
Alignment:
| Q |
16 |
aaaactacctggtggaataaaaagggacattgttcaatgggtcacaccatatgtacaaaagggtgtttttaaacatattgctgatccaaaattgaaaggg |
115 |
Q |
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| T |
46145903 |
aaaactacctggtggaataaaaagggacattgttcaatgggtcacaccatatgtacaaaagggtgtttttaaacatattgctgatccaaaattgaaaggg |
46145804 |
T |
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| Q |
116 |
aattttgatttagagcaattgaaatctgtgattatgatagctgtgaggtgcactgatagtagtcctgataaaaggcctagcatgatagaggtggtggaat |
215 |
Q |
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| T |
46145803 |
aattttgatttagagcaattgaaatctgtgattatgatagctgtgaggtgcactgatagtagtcctgataaaaggcctagcatgatagaggtggtggaat |
46145704 |
T |
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| Q |
216 |
ggcttaaggatggtatttcaaagagnnnnnnngagattccaaatttgagtaacaataagggacatgatgaagaaaatgatgaaaactatgaagagtttgt |
315 |
Q |
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| T |
46145703 |
ggcttaaggatggtgtttcaaagagaaaaaaagagattccaaatttgagtaacaataagggacatgatgaagaaaatgatgaaaactatgaagagtttgt |
46145604 |
T |
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| Q |
316 |
aacaatgcagtccaacaatttgaaaatactaagtgacaatgataggcgcaaaatgagatgatattttagtgtctgcttgttgaaatttaaaatacatctc |
415 |
Q |
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| T |
46145603 |
aacaatgcagtccaacaatttgaaaatactaagtgacaatgataggcgcaaaatgagatgatattttagtgtctgcttgttgaaatttaaaatacatctc |
46145504 |
T |
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| Q |
416 |
ttatgtttgagagaaactaagataaaaaatttagtatatttgtaggtatcttgttggccttgatcatctttattatatttaattaaatttctagttgttt |
515 |
Q |
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| T |
46145503 |
ttatgtttgagagaaactaagataaaaaatttagtatatttgtaggtatcttgttggccttgatcatctttattatatttaattaaatttctagttgttt |
46145404 |
T |
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| Q |
516 |
gtatggccgtatgagactatgactcataccaaatgtcaaggttatataattcat |
569 |
Q |
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| T |
46145403 |
gtatggccgtatgagactatgactcataccaaatgtcaaggttatataattcat |
46145350 |
T |
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