View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_8 (Length: 467)
Name: NF12661_high_8
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 11155712 - 11155530
Alignment:
| Q |
18 |
agaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcg |
117 |
Q |
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| T |
11155712 |
agaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcg |
11155613 |
T |
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| Q |
118 |
cttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgtgaaaattatgcatcacattattttttgacgca |
200 |
Q |
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| T |
11155612 |
cttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgtgaaaattatgcatcacattattttttgacgca |
11155530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 456
Target Start/End: Complemental strand, 11155458 - 11155296
Alignment:
| Q |
273 |
ttgattcatatacttggcctacaatttttagacaatactagttaatgcataattttataaaatataacaaaaagaagtgcaagacaattattagaaccct |
372 |
Q |
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| T |
11155458 |
ttgattcatatacttggcctacaatttttagaaaatactagttaatgcataattttataaaatataaagaaaagaagtgcaagacaattattagaaccc- |
11155360 |
T |
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| Q |
373 |
annnnnnnnccgaacaattatatttgcatctctcttacttttcttacgtacattctacttctacatttattttctcttcatctc |
456 |
Q |
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| T |
11155359 |
--------------------tatttgcatctctcttacttttcttacgtacattctacttctacatttattttctcttcatctc |
11155296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 11200215 - 11200120
Alignment:
| Q |
67 |
acaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacat |
162 |
Q |
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| T |
11200215 |
acaacatccaaacctcttatggagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatcacat |
11200120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 11137096 - 11136946
Alignment:
| Q |
18 |
agaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcg |
117 |
Q |
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| T |
11137096 |
agaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagttgatatttgggaaagcttcttgttca |
11136997 |
T |
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| Q |
118 |
cttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgt |
168 |
Q |
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| T |
11136996 |
ctcacaatggtatcagttttgttcaataaaactgatgcatcacaaccctgt |
11136946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 11145395 - 11145245
Alignment:
| Q |
18 |
agaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcg |
117 |
Q |
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| T |
11145395 |
agaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctctcaatgagtttctgtttggaaaagcatcttgttca |
11145296 |
T |
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| Q |
118 |
cttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgt |
168 |
Q |
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| T |
11145295 |
ctgacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgt |
11145245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 11149329 - 11149179
Alignment:
| Q |
18 |
agaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcg |
117 |
Q |
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||||||||||||||||||||| |||| | ||| |||||||| ||||| |||||||| ||||||||||| ||||| | ||||||||||| | |||||| |
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| T |
11149329 |
agaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctcttaatgagtttctgtttggaaaagcatcttgttca |
11149230 |
T |
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| Q |
118 |
cttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgt |
168 |
Q |
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| T |
11149229 |
ctcacaacggtatcagttttgttcagtaaaactgatgcatcacaaccctgt |
11149179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 11171320 - 11171230
Alignment:
| Q |
18 |
agaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagagttgttatttggaaaagct |
108 |
Q |
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| T |
11171320 |
agaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatctaaacctcttattgagttgttatttccaaaagct |
11171230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 11110207 - 11110094
Alignment:
| Q |
55 |
ttgatctgatttacaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgagg |
154 |
Q |
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| T |
11110207 |
ttgatttgattgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatg |
11110108 |
T |
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| Q |
155 |
catcacatccctgt |
168 |
Q |
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||||||| |||||| |
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| T |
11110107 |
catcacaaccctgt |
11110094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 11177326 - 11177243
Alignment:
| Q |
18 |
agaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagagttgttatttgg |
101 |
Q |
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|||||| ||||||||||||||| |||| | || ||||||||||| |||| || ||||||||||||| |||||||||||||| |
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| T |
11177326 |
agaaacagtgttaggacaagcattttccaccgctgttttgatctggtttatcacgtccaaacctcttatggagttgttatttgg |
11177243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 10794087 - 10794173
Alignment:
| Q |
62 |
gatttacaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaa |
148 |
Q |
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| T |
10794087 |
gattcacaacttgcaaacctcttatggagttgatatttgggagagcttgtagttcgctcacgatagtagcagtgttgttcagcaaaa |
10794173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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