View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_high_9 (Length: 458)
Name: NF12661_high_9
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_high_9 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Complemental strand, 8459554 - 8459115
Alignment:
| Q |
14 |
tcactgcgagataattcatttacggttgttgaacaccatgccattcttaatctttcaaataacgcaacaaatgactataaacataatctcgttgaaagat |
113 |
Q |
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| T |
8459554 |
tcactgcaagataattcatttacggttgttgaacaccatgccattcttaatctttcagataacgcaacaaatgactacaaacataatctcgttgaaagat |
8459455 |
T |
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| Q |
114 |
gtagcatggtctacaaaccatagattcaaaaccataatttatttaaatctccatcaaagaaacaatagagtactagtataaattgcctaaaaaattgaga |
213 |
Q |
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| T |
8459454 |
gtagcatggtctacaaaccatagattcaaaaccataatttatttaaatctccatcaaagaaacaatagagtactggtataaattgcctaaaaaattgaga |
8459355 |
T |
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| Q |
214 |
caaaaatcaaacatattcaatcaattattgttaaactcatgaaactttatatttgcaagatgttattaatgtccaaattggtccatatgttgcaacatta |
313 |
Q |
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| T |
8459354 |
caaaaatcaaacatattcaatcaattattgttaaactcatgaaactttatatttgcaagattttattaatgtccaaattgatccatatgttgcaacatta |
8459255 |
T |
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| Q |
314 |
ttcaagaaatagaaattataaaagagtaaatattcttcctcagnnnnnnnnnnnnnnnctacaagtattctaatgtctcaaaatatttgagataactaaa |
413 |
Q |
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| T |
8459254 |
ttcaagaaatagaaattataaaagagtaaatattcttcctca-----aaaaaaaaaaactacaagtattctaatgtctcaaaatatttgagataactaaa |
8459160 |
T |
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| Q |
414 |
ataatatcagcaactttctcaacatcatgagcatattttggaagc |
458 |
Q |
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| T |
8459159 |
ataatatcagcaactttctcaacatcatgagcatattttggaagc |
8459115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 458
Target Start/End: Complemental strand, 8464229 - 8463812
Alignment:
| Q |
22 |
agataattcatttacggttgttgaacaccatgccattcttaatctttcaaataacgcaacaaatgactataaacataatctcgttgaaagatgtagcatg |
121 |
Q |
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| T |
8464229 |
agataattcatttacagtcgttgaactccatgtcattcctagtgc--cagataacccaacaagtgactataaacataatatcgttaaaagatgtagcatg |
8464132 |
T |
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| Q |
122 |
gtctacaaaccatagattcaaaaccataatttatttaaatctccatcaaagaaacaatagagtactagtataaattgcctaaaaaattgagacaaaaatc |
221 |
Q |
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| T |
8464131 |
gtcaaaaaaccatggattcaaaaccataatttatttaaatctccatcaaagaaacattagagtactagtatgaattgcctaaaacattgagacaaaaatc |
8464032 |
T |
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| Q |
222 |
aaacatattcaatcaattattgttaaactcatgaaactttatatttgcaagatgttattaatgtccaaattggtccatatgttgcaacattattcaagaa |
321 |
Q |
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| T |
8464031 |
acacatattcaatcaattattgtcaaactcatgaaactt---------------ttattaatgtctagattgatccatatgttgcaacatcattcaacaa |
8463947 |
T |
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| Q |
322 |
atagaaattataaaagagtaaatattcttcctcagnnnnnnnnnnnnnnnctacaagtattctaatgtctcaaaatatttgagataactaaaataatatc |
421 |
Q |
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| T |
8463946 |
atacaaattataaatgagtaaatattcttcccta--aaaaagaaaaaaaactacaagtattctaatgtctcaaaatatttgagatagctaaaataatctc |
8463849 |
T |
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| Q |
422 |
agcaactttctcaacatcatgagcatattttggaagc |
458 |
Q |
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| T |
8463848 |
agcaactttctcaacatcatgagcatattttggaagc |
8463812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 8477743 - 8477667
Alignment:
| Q |
190 |
tataaattgcctaaaaaattgagacaaaaatcaaacatattcaatcaattattgttaaactcatgaaactttatattt |
267 |
Q |
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| T |
8477743 |
tataaattgcataaaaatttgtgacaaaattgca-catgttcaatcaattattgttaaactcaaaaaacttcatattt |
8477667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 41616799 - 41616852
Alignment:
| Q |
80 |
acaaatgactataaacataatctcgttgaaagatgtagcatggtctacaaacca |
133 |
Q |
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| T |
41616799 |
acaagtgactataaacataatctagttgaaatatgtaacatggtctacagacca |
41616852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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