View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_10 (Length: 440)
Name: NF12661_low_10
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 5351832 - 5352243
Alignment:
| Q |
18 |
aagtcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaat |
117 |
Q |
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||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351832 |
aagtcacactatcatctccgacaaattggagttttcatcgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaat |
5351931 |
T |
|
| Q |
118 |
ttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351932 |
ttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa |
5352031 |
T |
|
| Q |
218 |
ttgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatttagaattttatttgcat |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||| |
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| T |
5352032 |
ttgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgta-ttgttctttatttgcatttagaattttatttgcat |
5352130 |
T |
|
| Q |
318 |
tgttgccttgtcctgtgttttatttgcaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattcattctg |
417 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5352131 |
tgttgccttgtcctgtgtttgatttacaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattcattctg |
5352230 |
T |
|
| Q |
418 |
gtattacacaggt |
430 |
Q |
| |
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|||||||| |||| |
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| T |
5352231 |
gtattacataggt |
5352243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 5344817 - 5345024
Alignment:
| Q |
21 |
tcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaattta |
120 |
Q |
| |
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||||| || |||||||| ||||| || |||||| |||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
5344817 |
tcacaatatcatctccgacaaatcggagttttccttgatcttcatttcataaataaacccgaatttttcttaaatgcttttcagcctccagcaaaattta |
5344916 |
T |
|
| Q |
121 |
acggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattg |
220 |
Q |
| |
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| T |
5344917 |
atagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctgttgtccttgaaggcatttactctgcaacttcaaggcaaaaattg |
5345016 |
T |
|
| Q |
221 |
aaacaact |
228 |
Q |
| |
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|||||||| |
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|
| T |
5345017 |
aaacaact |
5345024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 5325267 - 5325075
Alignment:
| Q |
30 |
catctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatg |
129 |
Q |
| |
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|||||||||||||| || |||||| ||||| ||||||||||||||||||| ||||| | | || | | ||| ||| ||||| |||| ||||| ||||| |
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| T |
5325267 |
catctccgccaaatcggggttttccttgatattcatttcatcaataaacctgagttctacctagatgtatttaagcatccagataaatgtaacgatgatg |
5325168 |
T |
|
| Q |
130 |
gcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaa |
222 |
Q |
| |
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| || ||| ||||| |||| |||||||| ||| || |||| || |||||||||||| |||||||||| |||||||||||| |||||||| |
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|
| T |
5325167 |
gtgacttggttgatgaagagatcaagaatagattgaagaaagttattgtgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa |
5325075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 5338287 - 5338089
Alignment:
| Q |
30 |
catctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaatttaacggtgatg |
129 |
Q |
| |
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|||||||||||||| || |||||| ||||| ||||||||||||||||||| ||||| || | | ||| ||| ||||| |||||| ||| ||||| |
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| T |
5338287 |
catctccgccaaatcggggttttccttgatattcatttcatcaataaacctgagttccatctagatgtatttaagcatccagataaatttgacgatgatg |
5338188 |
T |
|
| Q |
130 |
gcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact |
228 |
Q |
| |
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| || ||| ||||| |||| |||||||| || ||| ||||||| ||||||| |||| |||||||||||| |||||||| ||| ||||||||||| |
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|
| T |
5338187 |
gtgacttggttgatgaagagatcaagaatagattcaaggaagttcttgtgtccttaaaggaatttacccttcagcttcaaggttaaatttgaaacaact |
5338089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 5345382 - 5345433
Alignment:
| Q |
357 |
aagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattc |
411 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
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|
| T |
5345382 |
aagtttgttaaaattccatgca--att-tgaaataatagtcttgtcacattattc |
5345433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 14535479 - 14535283
Alignment:
| Q |
21 |
tcacactaccatctccgccaaattggtgttttcattgatcttcatttcatcaataaacccgagtttttcttaaacgcgtttcagcctccagcaaaattta |
120 |
Q |
| |
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|||||||| ||||| |||||| |||| ||| || ||||||||||||||||||||||| ||||| || ||| || ||| |||| || ||||| || | |
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| T |
14535479 |
tcacactatcatctacgccaagttggaatttatatcgatcttcatttcatcaataaacctgagttctttataagagcatttgagccacctgcaaagttca |
14535380 |
T |
|
| Q |
121 |
acggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa |
217 |
Q |
| |
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| ||||||||||||||||||| |||| || |||||||| ||| | ||||||||| || ||| |||||||||| || |||||||||||||| |
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| T |
14535379 |
atactgatggcgatttgattgatgaagaggctaagaataagttgaaacaagttcttttatctttgcaggcatttactctaaggcttcaaggcaaaaa |
14535283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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