View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12661_low_13 (Length: 426)
Name: NF12661_low_13
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_13 |
 | |
|
| [»] scaffold0438 (2 HSPs) |
| | |
|
| [»] scaffold0713 (2 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0654 (2 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0438 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 118 - 422
Target Start/End: Complemental strand, 8819 - 8515
Alignment:
| Q |
118 |
ttttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaatgggaacacaccctttcaacattttcttgtcattga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
8819 |
ttttcactattaatattgttgatattttggttatcttttttttatactaaagtgtttattaaaataggaacacaccctttgaacattttcttgtcattga |
8720 |
T |
|
| Q |
218 |
tatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8719 |
tatttatgtttaaagtcatcaatactattatggtctctattaggaattatctatggcttattgagcaaatgatttgtaattgagatttgatggcatatac |
8620 |
T |
|
| Q |
318 |
tatggcatgagttttgagatgttgagaaatatgattttgatatatatgttattaaaagattttgatattaatatgtaattcatttggattggatttgcat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
8619 |
gatggcatgagttttgagatgttgagaaatatgattttgatatatatgtttttaaaagattttgatattattatgtaattcatttggattagatttgcat |
8520 |
T |
|
| Q |
418 |
ttcat |
422 |
Q |
| |
|
||||| |
|
|
| T |
8519 |
ttcat |
8515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 127 - 422
Target Start/End: Complemental strand, 11792 - 11496
Alignment:
| Q |
127 |
ttaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaatgggaacacaccctttcaacattttcttgtcattgatatttatgt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11792 |
ttaatattgttgatattttggttatcttttttttatgctaaagtgtttattaaaatgggaacacaccctttgaacattttcttgtcattgatatttatgt |
11693 |
T |
|
| Q |
227 |
ttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatg |
326 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
11692 |
ttaaagtcatcaatactattacggtctctattaggaattatctatggcttattgagcaaatgatttgtaattgagatttgatggcatatacgatggcatg |
11593 |
T |
|
| Q |
327 |
agttttgagatgttgagaaatatgattttgatatatatgttattaaaagattttgatattaatatgtaattca-tttggattggatttgcatttcat |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11592 |
agttttgagatgttgagaaatatgattttgaaatatatgtttttaaaagattttgatattaatatgtaattcattttggattggatttgcatttcat |
11496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 127 - 422
Target Start/End: Complemental strand, 26341631 - 26341335
Alignment:
| Q |
127 |
ttaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaatgggaacacaccctttcaacattttcttgtcattgatatttatgt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26341631 |
ttaatattgttgatattttggttatcttttttttatgctaaagtgtttattaaaatgggaacacaccctttgaacattttcttgtcattgatatttatgt |
26341532 |
T |
|
| Q |
227 |
ttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatg |
326 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
26341531 |
ttaaagtcatcaatactattacggtctctattaggaattatctatggcttattgagcaaatgatttgtaattgagatttgatggcatatacgatggcatg |
26341432 |
T |
|
| Q |
327 |
agttttgagatgttgagaaatatgattttgatatatatgttattaaaagattttgatattaatatgtaattca-tttggattggatttgcatttcat |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26341431 |
agttttgagatgttgagaaatatgattttgaaatatatgtttttaaaagattttgatattaatatgtaattcattttggattggatttgcatttcat |
26341335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 255
Target Start/End: Complemental strand, 4707731 - 4707558
Alignment:
| Q |
79 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttatta |
178 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| |||| | || ||| |||||||||||| | |
|
|
| T |
4707731 |
tcgtcatatctgtgagttgataacgatcattatcgcatattttccctattaatattattgatactttgataat----tttctatgttaaagtgtttataa |
4707636 |
T |
|
| Q |
179 |
aaat-gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| || |||| |||||||| |
|
|
| T |
4707635 |
aaatggggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatgttattatggtctct |
4707558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 392
Target Start/End: Complemental strand, 26918348 - 26918231
Alignment:
| Q |
275 |
ttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttattaaaa |
374 |
Q |
| |
|
|||||||||||| |||||| ||| | |||| | |||||||||||| ||||||||||||||| | |||||||| | |||||| ||||||||| || || |
|
|
| T |
26918348 |
ttattgagcaaaagatttgaaattgacgtttggttgcatatactatgacatgagttttgagatatggagaaatacggttttgagatatatgttcttggaa |
26918249 |
T |
|
| Q |
375 |
gattttgatattaatatg |
392 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26918248 |
atttttgatattaatatg |
26918231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 15998625 - 15998680
Alignment:
| Q |
91 |
tgagttgataatgatcattatcacatattttcactattaatattgttgatattttg |
146 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
15998625 |
tgagttgataacgatcattatcgcatattttccctattaatattattgatattttg |
15998680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 370
Target Start/End: Original strand, 18981354 - 18981640
Alignment:
| Q |
83 |
catagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat |
182 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||| | ||| |||| ||||||||||||| || | | |||||| ||| | |||| |
|
|
| T |
18981354 |
catagatgtgagttgatgatgatcattatcacttattttaattatcgctattattgatattttggtgat----tttataagttaaagtatttctcaaaac |
18981449 |
T |
|
| Q |
183 |
gggaa-cacaccctttcaaca-ttttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttatt |
279 |
Q |
| |
|
||||| |||||||||| |||| |||||| || |||| ||| |||||||| ||||| |||| |||| |||||||| || ||| || || || ||||| |
|
|
| T |
18981450 |
gggaagcacaccctttgaacatttttctcatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctgtgatttatt |
18981549 |
T |
|
| Q |
280 |
gagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttatt |
370 |
Q |
| |
|
||||||||| |||| |||| | ||||| | ||| ||||||| ||||||||||||| | |||||||| | |||||| | |||||||||| |
|
|
| T |
18981550 |
gagcaaatgttttgcaatcgatatttggttacatctactatgatgtgagttttgagatatggagaaatacggttttgagaaatatgttatt |
18981640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 82 - 367
Target Start/End: Complemental strand, 27562389 - 27562104
Alignment:
| Q |
82 |
tcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaa |
181 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| |||||||||||| |||| |
|
|
| T |
27562389 |
tcatagttgtgagttgataacgatcattatcacatattttcactattaatattattgatattttgataat----tttctatgttaaagtgtttataaaaa |
27562294 |
T |
|
| Q |
182 |
t--gggaacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttat |
278 |
Q |
| |
|
|||||||| |||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| ||||| ||| ||||| |
|
|
| T |
27562293 |
atggggaacacgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgacttat |
27562194 |
T |
|
| Q |
279 |
tgagcaaatgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
367 |
Q |
| |
|
||||||||||||||| ||| | |||| | |||||||||||| |||| |||||||||| | |||||||| | |||||| ||| ||||| |
|
|
| T |
27562193 |
tgagcaaatgatttgaaaatagatgtttggttgcatatactatgacatgggttttgagatatggagaaatacggttttgagatacatgtt |
27562104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 367
Target Start/End: Complemental strand, 54352975 - 54352771
Alignment:
| Q |
165 |
taaagtgtttattaaaatgggaacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa |
263 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| |
|
|
| T |
54352975 |
taaagtgtttataaaaatgggga-acaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggat |
54352877 |
T |
|
| Q |
264 |
ttatcaatggcttattga-gcaaatgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatata |
361 |
Q |
| |
|
||||| ||| |||||||| |||||||||| ||| || |||||| |||||||||||| ||||||||||||||| | |||||||| |||||||| ||| |
|
|
| T |
54352876 |
ttatctatgacttattgattaaaatgatttgaaaatagaggtttgattgcatatactatgacatgagttttgagatatggagaaatacgattttgagata |
54352777 |
T |
|
| Q |
362 |
tatgtt |
367 |
Q |
| |
|
|||||| |
|
|
| T |
54352776 |
tatgtt |
54352771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 18695402 - 18695346
Alignment:
| Q |
90 |
gtgagttgataatgatcattatcacatattttcactattaatattgttgatattttg |
146 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18695402 |
gtgagttgataacgatcattatcgcatattttccctattaatattattgatattttg |
18695346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 4764632 - 4764560
Alignment:
| Q |
183 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
4764632 |
gggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
4764560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 4764705 - 4764663
Alignment:
| Q |
89 |
tgtgagttgataatgatcattatcacatattttcactattaat |
131 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
4764705 |
tgtgagttgataacgatcattatcgcatattttccctattaat |
4764663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 18695308 - 18695236
Alignment:
| Q |
183 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | |||||||||||||| ||| |||| |||||||| |
|
|
| T |
18695308 |
gggaacacaccctttgaactttttcttatcaatgatgctcgtgtttaaagtcatcgatattattatggtctct |
18695236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 367
Target Start/End: Complemental strand, 47051778 - 47051491
Alignment:
| Q |
79 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttatta |
178 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | || ||| |||||||||| || |
|
|
| T |
47051778 |
tcgtcatatctgtgagttgataacgatcattatcatatattttcactattaatattattgatattttgataat----tttctatgttaaagtgttttata |
47051683 |
T |
|
| Q |
179 |
aaatggg-aacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggctt |
276 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| | | ||||| ||| ||| |
|
|
| T |
47051682 |
aaatggggaacacaccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttgaatttatctatgactt |
47051583 |
T |
|
| Q |
277 |
attgagcaaatgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
367 |
Q |
| |
|
||||||||||||||||| ||| | |||| | |||||||||||| |||| |||||||||| | |||||||| | |||||| |||||||| |
|
|
| T |
47051582 |
attgagcaaatgatttgaaaatagatgtttggttgcatatactatgacatgggttttgagatatggagaaatacggttttgaggtatatgtt |
47051491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 367
Target Start/End: Original strand, 16099774 - 16099981
Alignment:
| Q |
165 |
taaagtgtttattaaaatggg-aacacaccctttcaacatttt---cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattag |
260 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| | |
|
|
| T |
16099774 |
taaagtgtttataaaaatggggaacacaccctttgaacatttttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttg |
16099873 |
T |
|
| Q |
261 |
gaattatcaatggcttattga-gcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgata |
359 |
Q |
| |
|
|| ||||| ||| |||||||| |||||||||| || || |||||| |||||||||||| ||||||||||||||| | |||||||| | |||||| | |
|
|
| T |
16099874 |
gatttatctatgacttattgattaaaatgatttgagatagaggtttgattgcatatactatgacatgagttttgagatatggagaaatacggttttgaga |
16099973 |
T |
|
| Q |
360 |
tatatgtt |
367 |
Q |
| |
|
|||||||| |
|
|
| T |
16099974 |
tatatgtt |
16099981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 255
Target Start/End: Complemental strand, 17654605 - 17654442
Alignment:
| Q |
89 |
tgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat-gggaa |
187 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||| ||||| ||||| ||||| |
|
|
| T |
17654605 |
tgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttctatgttaaagtttttataaaaatggggaa |
17654510 |
T |
|
| Q |
188 |
cacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
|||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
17654509 |
cacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
17654442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 419
Target Start/End: Complemental strand, 47051308 - 47051262
Alignment:
| Q |
373 |
aagattttgatattaatatgtaattcatttggattggatttgcattt |
419 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
47051308 |
aagattttgatattaatatgtaattgatttgaattggatttgaattt |
47051262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 29290083 - 29290011
Alignment:
| Q |
264 |
ttatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgaga |
336 |
Q |
| |
|
||||| ||| ||||||||||||| |||||| ||| || |||| | || ||||||||| |||||||||||||| |
|
|
| T |
29290083 |
ttatctatgacttattgagcaaaagatttgaaattgaggtttggttgcttatactatgacatgagttttgaga |
29290011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 89 - 367
Target Start/End: Complemental strand, 39155883 - 39155605
Alignment:
| Q |
89 |
tgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat--ggga |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | || ||| |||||||||||| |||| |||| |
|
|
| T |
39155883 |
tgtgagttgataacgatcattatcacatattttcactattaatattattgatattttgataat----tttctatgttaaagtgtttataaaaaatgggga |
39155788 |
T |
|
| Q |
187 |
acacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaa |
285 |
Q |
| |
|
|||| |||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| ||||| ||| |||||||||||| |
|
|
| T |
39155787 |
acacgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggatttatctatgacttattgagcaa |
39155688 |
T |
|
| Q |
286 |
atgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
367 |
Q |
| |
|
|||||||| ||| | |||| | |||||||||||| || | |||||||||| | |||||||| | |||||| ||| ||||| |
|
|
| T |
39155687 |
atgatttgaaaatagatgtttggttgcatatactatgacacgggttttgagatatggagaaatacggttttgagatacatgtt |
39155605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 370
Target Start/End: Complemental strand, 809924 - 809633
Alignment:
| Q |
79 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttatta |
178 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||||||||| | |
|
|
| T |
809924 |
tcgtcatatctgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttctatgttaaagtgtttataa |
809829 |
T |
|
| Q |
179 |
aaa---tgggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggc |
274 |
Q |
| |
|
||| ||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| || ||| || || ||| |
|
|
| T |
809828 |
aaaaatggggaacacaccctttgaactttttcttatcaatgatgctcatgtttaaagtcatcgatattattatggtctctgttttgaacttgtctatgat |
809729 |
T |
|
| Q |
275 |
ttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttatt |
370 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||| | ||||||||||| ||||||||||||| | |||||||| | |||||| | |||||||||| |
|
|
| T |
809728 |
ttattgagcaaatgttttgcaatcgagatttggttacatatactatgatgtgagttttgagatatggagaaatacggttttgagaaatatgttatt |
809633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 15001940 - 15001885
Alignment:
| Q |
91 |
tgagttgataatgatcattatcacatattttcactattaatattgttgatattttg |
146 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15001940 |
tgagttgataacgatcattatcacatattttcactattaatattattgatattttg |
15001885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 370
Target Start/End: Original strand, 44323141 - 44323298
Alignment:
| Q |
214 |
ttgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttattgagcaaatgatttgtaatcaagatttgatggca |
312 |
Q |
| |
|
|||| ||| |||||||| ||||| |||| |||| |||||||| || ||| || || ||| |||||||||||||| |||| |||||||||||||| || |
|
|
| T |
44323141 |
ttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattgagcaaatgttttgcaatcaagatttgattaca |
44323240 |
T |
|
| Q |
313 |
tatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttatt |
370 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||| | || ||| | |||||||||| |
|
|
| T |
44323241 |
tatactatgatgtgagttttgagatatggagaaatacggttatgagaaatatgttatt |
44323298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 317
Target Start/End: Complemental strand, 9312440 - 9312312
Alignment:
| Q |
190 |
caccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaatg |
288 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||| |||||||| ||||||| |||||| |||| || ||||| ||| |||||||| |||| |
|
|
| T |
9312440 |
caccctttcaagatttttcttctcattgatatttatgttgaaagtcattgatactataatggtctttatttagatttatctatgacttattgaacaaaca |
9312341 |
T |
|
| Q |
289 |
atttgtaatcaagatttgatggcatatac |
317 |
Q |
| |
|
||||| ||| ||||||| | |||||||| |
|
|
| T |
9312340 |
atttgaaattgagatttggttgcatatac |
9312312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 367
Target Start/End: Original strand, 10414983 - 10415098
Alignment:
| Q |
252 |
ctctattaggaattatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatga |
351 |
Q |
| |
|
||||||| ||| ||||| ||| ||||||||||||| |||||| ||| || |||| | || ||||||||| ||||||||||||| | ||||||| | |
|
|
| T |
10414983 |
ctctatttggatttatctatgacttattgagcaaaagatttgaaattgaggtttggttgcctatactatgatatgagttttgagaaatgaagaaatacgg |
10415082 |
T |
|
| Q |
352 |
ttttgatatatatgtt |
367 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
10415083 |
ttttgagatatatgtt |
10415098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 2587553 - 2587599
Alignment:
| Q |
373 |
aagattttgatattaatatgtaattcatttggattggatttgcattt |
419 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
2587553 |
aagattttgatattaatatgtaattggtttgaattggatttgaattt |
2587599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 89 - 367
Target Start/End: Original strand, 19433944 - 19434221
Alignment:
| Q |
89 |
tgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaatggg-aa |
187 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| | || || |||||||||||| |||||||| || |
|
|
| T |
19433944 |
tgtgagttgataacgatcattatcacatatttttactattaatattattgatattttgataat----tttctatcttaaagtgtttataaaaatggggaa |
19434039 |
T |
|
| Q |
188 |
cacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattgagcaaa |
286 |
Q |
| |
|
|| |||||| |||||||| ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||||| | | ||||| ||| ||||||||||||| |
|
|
| T |
19434040 |
catgccctttgaacatttttcttctcattgatacttatgtttaaagtcatcgatattattatggtctctatttgaatttatctatgacttattgagcaaa |
19434139 |
T |
|
| Q |
287 |
tgatttg-taatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
367 |
Q |
| |
|
||||||| ||| | |||| | ||||| |||||| |||| ||||| |||| | |||||||| | |||||| ||||||||| |
|
|
| T |
19434140 |
tgatttgaaaatagatgtttggttgcatagactatgacatgggttttcagatatggagaaatacggttttgagatatatgtt |
19434221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 367
Target Start/End: Complemental strand, 5706687 - 5706501
Alignment:
| Q |
183 |
gggaacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatcaatggcttattga |
281 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||| ||| |||||||| ||| | |||| || | ||||||||||| ||| ||||| ||| |||||||| |
|
|
| T |
5706687 |
gggaacacaccctttcaatatttttcttgttgttgaaatt-atgtttaaggtcgtgaatattaatatggtctctatttggatttatctatgacttattga |
5706589 |
T |
|
| Q |
282 |
gcaaa-tgatttgtaatca-agatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
367 |
Q |
| |
|
||| ||||||| || | || |||||| |||||||||||| ||||||||||||||| | |||||||| | |||||| | ||||||| |
|
|
| T |
5706588 |
ttaaaatgatttgaaaatagaggtttgattgcatatactatgacatgagttttgagatatggagaaatacggttttgagagatatgtt |
5706501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 6912580 - 6912514
Alignment:
| Q |
79 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatatttt |
145 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
6912580 |
tcgtcataactgtgagttgataacgatcattatcgcatattttccctattaatattattgatatttt |
6912514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 29755160 - 29755061
Alignment:
| Q |
24 |
ggtgtaaattgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtcata--gttgtgagttgataatgatcattatcacatatttt |
121 |
Q |
| |
|
|||| ||||||||| |||||| ||| |||||| ||||| ||||||| || ||| |||||||| ||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
29755160 |
ggtgaaaattgctctagtgattattacggaagacattgttaagaacatagttgattcgtcatatagttgtgagttgatcacgatcattatcatatatttt |
29755061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 19434404 - 19434450
Alignment:
| Q |
373 |
aagattttgatattaatatgtaattcatttggattggatttgcattt |
419 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
19434404 |
aagattttgatattaatatgtaattgatttgaattggatttgaattt |
19434450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 6912475 - 6912403
Alignment:
| Q |
183 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
6912475 |
gggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
6912403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 29469499 - 29469378
Alignment:
| Q |
165 |
taaagtgtttattaaaatggg-aacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa |
263 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||| | || | ||||||||||| ||| |
|
|
| T |
29469499 |
taaagtgtttataaaaatggggaacacaccctttcaatattttcttgtcattgatacttacatttaaagtcatcaaaattaatatggtctctatttggat |
29469400 |
T |
|
| Q |
264 |
ttatcaatggcttattgagcaa |
285 |
Q |
| |
|
| ||| ||| ||||||||||| |
|
|
| T |
29469399 |
tcatctatgatttattgagcaa |
29469378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 36265698 - 36265597
Alignment:
| Q |
21 |
tgtggtgtaaattgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtcatagttgtgagttgataatgatcattatcacatattt |
120 |
Q |
| |
|
||||||| |||||||| | | | |||||||||||| ||||||| ||| |||| ||||||||||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
36265698 |
tgtggtgaaaattgcttcggcggtcatttcggaagaaattgctaggaatggagttgactcgtcatagttgtgagttgatgaggatcattatcacttattt |
36265599 |
T |
|
| Q |
121 |
tc |
122 |
Q |
| |
|
|| |
|
|
| T |
36265598 |
tc |
36265597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 337
Target Start/End: Original strand, 28802516 - 28802778
Alignment:
| Q |
72 |
agctgactcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtg |
171 |
Q |
| |
|
|||||| |||||||| |||||||||| | ||||||||||||||||||||| ||| |||| |||||||||| | || ||| ||||||| |
|
|
| T |
28802516 |
agctgattcgtcataacagtgagttgatgacgatcattatcacatattttcattatcgttattattgatatttttatgat----tttatatgttaaagtg |
28802611 |
T |
|
| Q |
172 |
tttattaaaatggg-aacacaccctttcaacattt-tcttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaattatca |
269 |
Q |
| |
|
||||| |||||||| ||||||| |||| ||||||| || | ||||||||| ||||| | |||||||| ||| ||| ||||||||||| || ||||| |
|
|
| T |
28802612 |
tttataaaaatggggaacacactctttgaacatttctcctctcattgatacttatggtaaaagtcattgatattatcatggtctctatttagatttatcc |
28802711 |
T |
|
| Q |
270 |
atggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagat |
337 |
Q |
| |
|
|| |||||||||||||||||||| ||| ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
28802712 |
ttg-cttattgagcaaatgatttgaaattgagatttggctgcatatacaatgacatgagttttgagat |
28802778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 29469549 - 29469512
Alignment:
| Q |
103 |
gatcattatcacatattttcactattaatattgttgat |
140 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
29469549 |
gatcattatcacatatcttcactattaatattattgat |
29469512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 30943335 - 30943411
Alignment:
| Q |
75 |
tgactcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttat |
151 |
Q |
| |
|
|||||| ||||| || ||||||||||| |||||||||| ||||||| | |||| |||| ||||||||||| |||| |
|
|
| T |
30943335 |
tgactcttcataattatgagttgataacaatcattatcatatattttaattattgttattattgatattttgcttat |
30943411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 4060 - 4221
Alignment:
| Q |
91 |
tgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat-gggaaca |
189 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||| ||||| ||||| ||||||| |
|
|
| T |
4060 |
tgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttctatgttaaagtttttataaaaatggggaaca |
4155 |
T |
|
| Q |
190 |
caccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
4156 |
caccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
4221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 13 - 85
Alignment:
| Q |
183 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
13 |
gggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
85 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 253
Target Start/End: Original strand, 9821613 - 9821774
Alignment:
| Q |
89 |
tgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttattaaaat-gggaa |
187 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||||||||| ||||| ||||| |
|
|
| T |
9821613 |
tgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttatatgttaaagtgtttataaaaatggggaa |
9821708 |
T |
|
| Q |
188 |
cacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtct |
253 |
Q |
| |
|
|||||||||| ||| |||||| ||| |||| | ||||||||||||||| ||| |||| |||||| |
|
|
| T |
9821709 |
cacaccctttgaactttttctcctcaatgatgctcatgtttaaagtcatcgatattattatggtct |
9821774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 188 - 370
Target Start/End: Original strand, 22013006 - 22013190
Alignment:
| Q |
188 |
cacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttattgagcaa |
285 |
Q |
| |
|
|||||||||| |||||||| ||| || |||| ||| |||||||| ||||| |||| |||| |||||||| || ||| || || ||| ||||||||||| |
|
|
| T |
22013006 |
cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattgagcaa |
22013105 |
T |
|
| Q |
286 |
atgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgttatt |
370 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||| ||||||||||||| | |||||||| | || ||| | |||||||||| |
|
|
| T |
22013106 |
atgttttgcaatcaagatttgattacatatactatgatgtgagttttgagatatggagaaatacggttatgagaaatatgttatt |
22013190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 28039675 - 28039731
Alignment:
| Q |
90 |
gtgagttgataatgatcattatcacatattttcactattaatattgttgatattttg |
146 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
28039675 |
gtgagttgataacgatcattatcacatatttttactattaatattattgatattttg |
28039731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 33062074 - 33062146
Alignment:
| Q |
183 |
gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
33062074 |
gggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatggtctct |
33062146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 281
Target Start/End: Complemental strand, 5520590 - 5520474
Alignment:
| Q |
165 |
taaagtgtttattaaaatgggaacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa |
263 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||| |||||||| | | ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| |
|
|
| T |
5520590 |
taaagtgtttataaaaatgggga-acaccctttgaacatttttcctctcattgatacttatgtttaaagtcatcgatattattatggtctctatttggat |
5520492 |
T |
|
| Q |
264 |
ttatcaatggcttattga |
281 |
Q |
| |
|
||||| ||| |||||||| |
|
|
| T |
5520491 |
ttatctatgacttattga |
5520474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 367
Target Start/End: Original strand, 42784544 - 42784725
Alignment:
| Q |
188 |
cacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattaggaa-ttatcaatggcttattgagcaa |
285 |
Q |
| |
|
|||||||||| |||||||| ||| || |||| ||| |||||||| ||||| |||| |||| |||||||| || ||| || || ||| ||||||||||| |
|
|
| T |
42784544 |
cacaccctttgaacatttttcttatcgttgaaattgatgtttaaggtcatgaatattattatggtctctgttttgaacttgtctatgatttattgagcaa |
42784643 |
T |
|
| Q |
286 |
atgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgttgagaaatatgattttgatatatatgtt |
367 |
Q |
| |
|
||| |||| |||| |||||| | ||| ||||||| ||||||||||||| | |||||||| |||||||| | ||||||| |
|
|
| T |
42784644 |
atgttttgcaatcgagatttagttacatctactatgatgtgagttttgagatatagagaaatacgattttgagaaatatgtt |
42784725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 21849583 - 21849651
Alignment:
| Q |
31 |
attgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtcatagttgtgagttgat |
99 |
Q |
| |
|
|||||||| ||| | |||||| |||||||||||| ||||| || |||||||||||| |||||||||||| |
|
|
| T |
21849583 |
attgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatttgtgagttgat |
21849651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 21857497 - 21857565
Alignment:
| Q |
31 |
attgctccagtgatcatttcggaaggcattgctaagaacggagctgactcgtcatagttgtgagttgat |
99 |
Q |
| |
|
|||||||| ||| | |||||| |||||||||||| ||||| || |||||||||||| |||||||||||| |
|
|
| T |
21857497 |
attgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatttgtgagttgat |
21857565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 339
Target Start/End: Original strand, 15597662 - 15597837
Alignment:
| Q |
165 |
taaagtgtttattaaaatggg-aacacaccctttcaacatttt-cttgtcattgatatttatgtttaaagtcatcaatactattctggtctctattagga |
262 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||| || ||||| | | ||||||||| ||||||| | |||||| ||| |||| |||||||||||| |
|
|
| T |
15597662 |
taaagtatttataaaaatggggaacacaccctttgaagatttttcctctcattgatacttatgttaacagtcattgatattattatggtctctattaatt |
15597761 |
T |
|
| Q |
263 |
attatcaatggcttattgagcaaatgatttgtaatcaagatttgatggcatatactatggcatgagttttgagatgt |
339 |
Q |
| |
|
| |||| || |||||||||||| ||||| ||| ||||||| | |||||||| ||| ||||||||||| ||||| |
|
|
| T |
15597762 |
a-tatctttgatttattgagcaaagaatttgaaattgagatttggttgcatatacaatgacatgagttttgtgatgt |
15597837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 2595 - 2771
Alignment:
| Q |
79 |
tcgtcatagttgtgagttgataatgatcattatcacatattttcactattaatattgttgatattttggttatcnnnnnnnnatgctaaagtgtttatta |
178 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| | || ||| |||||||||||| | |
|
|
| T |
2595 |
tcgtcataactgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataat----tttctatgttaaagtgtttataa |
2690 |
T |
|
| Q |
179 |
aaat----gggaacacaccctttcaacattttcttgtcattgatatttatgtttaaagtcatcaatactattctggtctct |
255 |
Q |
| |
|
||| ||||||||||||||| ||| ||||||| ||| |||| | ||||||||||||||| ||| |||| || ||||| |
|
|
| T |
2691 |
aaaaaatggggaacacaccctttgaactttttcttctcaatgatgctcatgtttaaagtcatcgatattattatgttctct |
2771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 4520 - 4480
Alignment:
| Q |
373 |
aagattttgatattaatatgtaattcatttggattggattt |
413 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
4520 |
aagattttgatattaatatgtactccatttggattggattt |
4480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 5874 - 5834
Alignment:
| Q |
373 |
aagattttgatattaatatgtaattcatttggattggattt |
413 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
5874 |
aagattttgatattaatatgtactccatttggattggattt |
5834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 115800 - 115760
Alignment:
| Q |
373 |
aagattttgatattaatatgtaattcatttggattggattt |
413 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
115800 |
aagattttgatattaatatgtactccatttagattggattt |
115760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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