View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_14 (Length: 425)
Name: NF12661_low_14
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 37155235 - 37154819
Alignment:
| Q |
1 |
tcaatgttactaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155235 |
tcaatgttactaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatat |
37155136 |
T |
|
| Q |
101 |
agagaatgcgaccaataacatgtagtttcttcttttcttgcacagaaatagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37155135 |
agagaatgcgaccaataacatgtagtttcttcttttcttgcacagaaacagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatc |
37155036 |
T |
|
| Q |
201 |
cttgtcatcaattatcaagctaactaactgactactattttgcacaataagctgctgaaggagggacagagcttcaattacaacttcattctttggaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37155035 |
cttgtcatcaattatcaagctaactaactgactactattttgcacaataagctgctgaaggagggacagagcttcaattacaacttcattctttggaaag |
37154936 |
T |
|
| Q |
301 |
tcaataccatctgtgggtgctagagtaaaagagaaatttggctccattaaataggtatttatggtgtcttttaatgaagaccaaatagccccaacatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154935 |
tcaataccatctgtgggtgctagagtaaaagagaaatttggctccattaaataggtatttatggtgtcttttaatgaagaccaaatagccccaacatatt |
37154836 |
T |
|
| Q |
401 |
ttgcgattctctctgct |
417 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
37154835 |
ttgcgattctctctgct |
37154819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25222995 - 25223180
Alignment:
| Q |
1 |
tcaatgttactaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatat |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| || || | |
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|
| T |
25222995 |
tcaatgtcactaacagaaaatctcaaactatccatcatgcttagtaaaaggttttgaaacaaggcattgcaggaaggcattga----------------t |
25223078 |
T |
|
| Q |
101 |
agagaatgcgaccaataacatgtagtttcttcttttcttgcacagaaatagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatc |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25223079 |
agagaatgcgaccaatatcatgtagtttcttcttttcttcgacataaatagtgttatacatctcataagacgcaatgctgttgataataaagttgacatc |
25223178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25287151 - 25287336
Alignment:
| Q |
1 |
tcaatgttactaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatat |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| || || | |
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|
| T |
25287151 |
tcaatgtcactaacagaaaatctcaaactatccatcatgcttagtaaaaggttttgaaacaaggcattgcaggaaggcattga----------------t |
25287234 |
T |
|
| Q |
101 |
agagaatgcgaccaataacatgtagtttcttcttttcttgcacagaaatagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatc |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25287235 |
agagaatgcgaccaatatcatgtagtttcttcttttcttcgacataaatagtgttatacatctcataagacgcaatgctgttgataataaagttgacatc |
25287334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 22830841 - 22830907
Alignment:
| Q |
349 |
aaataggtatttatggtgtcttttaatgaagaccaaatagccccaacatattttgcgattctctctg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||| |
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|
| T |
22830841 |
aaataggtatttatggtgtcttttaatgaagacaaaatagcgtcggtatattttgcgattttctctg |
22830907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 43387156 - 43386740
Alignment:
| Q |
1 |
tcaatgttactaacagaaaatcccaaactatccatcattcttagtaaaagactttgaaacacggcattgcaggaaggaatggaagtcttggcaaaaatat |
100 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
43387156 |
tcaatgttgctagcagaaaatcccaatttatccatcattcttaagaaaagactttgaaacacagcattgcaggaaggaatggaagtcttggcagaaatat |
43387057 |
T |
|
| Q |
101 |
agagaatgcgaccaataacatgtagtttcttcttttcttgcacagaaatagcgtcgtacatctcataagatgcaatgctgttgataataaagttgacatc |
200 |
Q |
| |
|
| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
43387056 |
ataaaatgcgaccaatagcatgtagtttcttcttttcttgcacagaaatagtgtcgtacatctcataagatgcaatgctgttggtaatgaagttgacatc |
43386957 |
T |
|
| Q |
201 |
cttgtcatcaattatcaagctaactaactgactactattttgcacaataagctgctgaaggagggacagagcttcaattacaacttcattctttggaaag |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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|
| T |
43386956 |
ctcatcatcaattatcaagctaactaactgactactattttgcacaataagctgctgaaggagggagagagcttcaactacaacttcgctctttggaaaa |
43386857 |
T |
|
| Q |
301 |
tcaataccatctgtgggtgctagagtaaaagagaaatttggctccattaaataggtatttatggtgtcttttaatgaagaccaaatagccccaacatatt |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||| ||||| |||| || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43386856 |
ttgataccatctgtgggtgctagagtaaaagagaaatctggctcccccaaataagtatataaagtgtcttttaatgaagaccaaatagccccagtatatt |
43386757 |
T |
|
| Q |
401 |
ttgcgattctctctgct |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43386756 |
ttgcgattctctctgct |
43386740 |
T |
|
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