View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12661_low_17 (Length: 419)
Name: NF12661_low_17
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_17 |
 | |
|
| [»] scaffold0736 (1 HSPs) |
| | |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 25582617 - 25582827
Alignment:
| Q |
10 |
agaacccaagaaaggaaaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggag |
109 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25582617 |
agaacccaagaaagaaaaaattaagcgattaatcaaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttgaagctctctaggag |
25582716 |
T |
|
| Q |
110 |
gagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25582717 |
gagtctcaataacatgtaaatcaaaggagtccagagatagattaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctg |
25582816 |
T |
|
| Q |
210 |
aaacatgtcaa |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
25582817 |
aaacatgtcaa |
25582827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 33 - 391
Target Start/End: Complemental strand, 3243847 - 3243483
Alignment:
| Q |
33 |
agcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatgtaaatca |
132 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||| | |||| ||||||| ||||| | |||| |||||||| || ||||||||||| | ||| |||||| |
|
|
| T |
3243847 |
agcgattaatcgaacattccgtggcatgcaaacgctagaaatctcatcaaaaaggagacgttgaagctctcttgggggagtctcaatcatatgcaaatca |
3243748 |
T |
|
| Q |
133 |
aaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctgaaacatgtcaagtcatgtttttt |
232 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||| |||||| || ||||||||||| |
|
|
| T |
3243747 |
aaggtgtccaaagatagactaaagttagctaaccaatctgctgatttgtttccttcaggccatgtatggttgatctg-aacatgctaactcatgtttttt |
3243649 |
T |
|
| Q |
233 |
agatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaactaaaactgataagtcactttccacttgta |
332 |
Q |
| |
|
|| ||||||||| ||| ||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||| ||| ||||||||||| | |
|
|
| T |
3243648 |
aggtcacgaatgtgccgaatcaaggtaggaacattttcattgttgttacatttccctgttaccatgtcaactaaaagtgatgggtcgctttccacttgca |
3243549 |
T |
|
| Q |
333 |
ggtgtgtgat-ctctgtct------ccgatccataccaatatacatgccccccatctctgcatgta |
391 |
Q |
| |
|
|||||||||| | |||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3243548 |
ggtgtgtgatcccctgtctttgagccatatccataccaatatacatgccccacatctctgcatgta |
3243483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 11895923 - 11896228
Alignment:
| Q |
26 |
aaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatg |
125 |
Q |
| |
|
|||||||||| | ||||||||| || |||||||| ||||||| |||||||||||||| ||||| | |||| ||||||||| ||||||||||||| | || |
|
|
| T |
11895923 |
aaaactaagcaaataatcgaacatttcgaggcatacaagcgcgataaatgtcatcaaaaaggagacgttgaagctctctaagaggagtctcaatcatgtg |
11896022 |
T |
|
| Q |
126 |
taaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctgaaacatgtcaagtcat |
225 |
Q |
| |
|
|| |||||||| ||| | |||||||||||| ||||||| |||||||||| || | |||||||||| ||||||||| |||| || |||||| ||| |||| |
|
|
| T |
11896023 |
tagatcaaaggcgtccaaagatagactaaaattagctagccaatctgctgatctatttccttcacgccatgtatggttgatatg-aacatgccaactcat |
11896121 |
T |
|
| Q |
226 |
gttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaactaaaactgataagtcactttcc |
325 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||||||||| || ||||||||||| | |||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
11896122 |
gttttttaggtcacgaatgcgctgaattaaggtaggaacattttcgttgatgttacattttcctgttaccatgtcaactaaaagtgatgagtcgctttcc |
11896221 |
T |
|
| Q |
326 |
acttgta |
332 |
Q |
| |
|
|| |||| |
|
|
| T |
11896222 |
acctgta |
11896228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 25 - 399
Target Start/End: Original strand, 25376037 - 25376426
Alignment:
| Q |
25 |
aaaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaag-gaaatgttggagctctctaggaggagtctcaataaca |
123 |
Q |
| |
|
|||||||||| ||||||| |||| || |||||||||||||| | | |||| |||| || || || |||||| || | |||| ||||||||||||| | | |
|
|
| T |
25376037 |
aaaaactaagagattaattgaacatttcgaggcatgcaagcacgagaaatatcataaaaaaaagagatgttgaagttatctaagaggagtctcaatcata |
25376136 |
T |
|
| Q |
124 |
tgtaaat-------caaaggagtctaga-gatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctgaaacat |
215 |
Q |
| |
|
||||||| |||||| ||||| | |||| |||||||||||||| |||||||||| || |||||||||||| || |||||| ||||||||| ||| |
|
|
| T |
25376137 |
tgtaaattgtaaatcaaaggtgtctaaaagataaactaaagttagctagccaatctgctgatttgtttccttcacgccaggtatggttgatctgaa-cat |
25376235 |
T |
|
| Q |
216 |
gtcaagtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaactaaaactgataa |
315 |
Q |
| |
|
| ||| ||||||||||||| ||| ||||||||||||| |||||||||||||| | ||| ||||||||||||| | |||||||||||||||||| |||| | |
|
|
| T |
25376236 |
gccaactcatgttttttaggtcatgaatgcgccaaatcaaggtaggaacatttccattgatgttacatttccctattaccatgtcaactaaaagtgatga |
25376335 |
T |
|
| Q |
316 |
gtcactttccacttgtaggtgtgtgatctctg-tctccg------atccataccaatatacatgccccccatctctgcatgtaacacgtca |
399 |
Q |
| |
|
|| |||||||||| | | |||||||| | | |||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
25376336 |
gttgttttccacttgcaagagtgtgatccccgatctccgagccatatccataccaatatacatgccccacatctctgcatgtaacgcgtca |
25376426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 25582820 - 25582924
Alignment:
| Q |
295 |
catgtcaactaaaactgataagtcactttccacttgtaggtgtgtgatctctgtctccgatccataccaatatacatgccccccatctctgcatgtaaca |
394 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25582820 |
catgtcaactaaaactgatgagtcgctttccacttgtaggtgtgtgatccctgtctccgatccataccaatatacatgccccccatctctgcatgtaacg |
25582919 |
T |
|
| Q |
395 |
cgtca |
399 |
Q |
| |
|
||||| |
|
|
| T |
25582920 |
cgtca |
25582924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 13808695 - 13808448
Alignment:
| Q |
26 |
aaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatg |
125 |
Q |
| |
|
||||||||||||||| | ||| || |||||||||||||||||| ||||||||| || ||||| | |||| |||||| |||||||||||||||| | || |
|
|
| T |
13808695 |
aaaactaagcgattagttgaatatttcgaggcatgcaagcgccaaaaatgtcataaaaaaggagacgttgaagctctttaggaggagtctcaatcatata |
13808596 |
T |
|
| Q |
126 |
taaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctga------aacatgtca |
219 |
Q |
| |
|
||||||||||| || | |||||||||||| ||||||| ||| ||| || || |||||||||||| ||||||||| |||| ||| |||||| || |
|
|
| T |
13808595 |
taaatcaaaggtgttcaaagatagactaaaattagctagccagtctactgatttgtttccttcacaccatgtatggttgatatgacatatgaacatgcca |
13808496 |
T |
|
| Q |
220 |
agtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacatt |
267 |
Q |
| |
|
| ||||||||||||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
13808495 |
actcatgttttttagctcccgaatgcgacaaatcaaggtaggaacatt |
13808448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 97 - 393
Target Start/End: Original strand, 32295582 - 32295886
Alignment:
| Q |
97 |
agctctctaggaggagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatg |
196 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| || || | ||| |||||||| |||| || |||| | |||||||||||||| | || |
|
|
| T |
32295582 |
agctctctaggaggagtctaaataacatataaatcaaaagaatccaaagagagactaaaattagttagtcaattcgtcgttatgtttccttcacgccttg |
32295681 |
T |
|
| Q |
197 |
tatggctgatctgaaacatgtcaagtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttacca |
296 |
Q |
| |
|
||||| |||| |||| | |||||| |||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
32295682 |
tatggttgatttgaa-cttgtcaactcatgttttttagatcacgaatgcaccgaatcaaggtaggaacattcccattaatgttacatttccatgttacca |
32295780 |
T |
|
| Q |
297 |
tgtcaactaaaactgataagtcactttccacttgtaggtgtgtgat-ctctgtctccg--------atccataccaatatacatgccccccatctctgca |
387 |
Q |
| |
|
|| ||| |||||| |||| || |||||||||||||| ||||| | ||||||| | || |||||||||||||||||||| ||||||| || |
|
|
| T |
32295781 |
cgttaaccaaaactttagagtcgctctccacttgtaggtgcgtgatcccctgtctctgagccatatattcataccaatatacatgccccacatctctaca |
32295880 |
T |
|
| Q |
388 |
tgtaac |
393 |
Q |
| |
|
|||||| |
|
|
| T |
32295881 |
tgtaac |
32295886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 310
Target Start/End: Original strand, 40575217 - 40575423
Alignment:
| Q |
104 |
taggaggagtctcaataacatgtaaatcaaag-gagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggc |
202 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||| |||| || ||||| |||||| ||| || ||||| | |||||||| ||||| | |||||||| | |
|
|
| T |
40575217 |
taggatgagtcttaataacaagtaaatcaaagagagtttaaagataaactaaaattaattagccaatttatcaatatgttaccttcgcatcatgtatagt |
40575316 |
T |
|
| Q |
203 |
tgatctgaaacatgtcaagtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaa |
302 |
Q |
| |
|
|||| |||| | || || || |||||||||| | |||||| |||||||| | ||||||||||||| ||| || ||||||||| |||||||||| || | |
|
|
| T |
40575317 |
tgatttgaa-cttgctaactcgtgttttttaggttacgaatacgccaaatcagggtaggaacattctaattgatattacatttctttgttaccatatcta |
40575415 |
T |
|
| Q |
303 |
ctaaaact |
310 |
Q |
| |
|
||||||| |
|
|
| T |
40575416 |
ataaaact |
40575423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 13808443 - 13808402
Alignment:
| Q |
289 |
tgttaccatgtcaactaaaactgataagtcactttccacttg |
330 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
13808443 |
tgttaccatgtcaactaaaagtgatgagtcactttccacttg |
13808402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 71 - 398
Target Start/End: Complemental strand, 491162 - 490829
Alignment:
| Q |
71 |
aaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatc |
170 |
Q |
| |
|
|||| |||| || ||||| | |||| ||||||||||||||||||||||| | |||||||||||||| ||| | |||||||||||| ||||||| |||||| |
|
|
| T |
491162 |
aaatatcataaaaaaggagacgttgaagctctctaggaggagtctcaatcatatgtaaatcaaaggtgtccaaagatagactaaaattagctagccaatc |
491063 |
T |
|
| Q |
171 |
tgctaatatgtttccttcacttcatgtatggctgatctgaaacatgtcaagtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacattccg |
270 |
Q |
| |
|
|| | || ||||||||||||| ||||||||| |||| |||| |||| ||| ||||||||||||| |||||||||||| ||| |||||||||||||| | |
|
|
| T |
491062 |
tgttgatctgtttccttcactccatgtatggttgatatgaa-catgccaactcatgttttttaggtcacgaatgcgctgaatcaaggtaggaacatttcc |
490964 |
T |
|
| Q |
271 |
attaatgttacatttccttgttaccatgtcaactaaaactgataagtcactttccacttgtaggtgtgtgat-ctctgtctccg------atccatacca |
363 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||| |||| |||| ||||||||||| | ||||||||| | ||||||||| |||||||||| |
|
|
| T |
490963 |
attgatgttacatttccctgttaccatgtcaactaaaagtgatgagtcgctttccacttgcaagtgtgtgatcccctgtctccgagccatatccatacca |
490864 |
T |
|
| Q |
364 |
atatacatgccccccatctctgcatgtaacacgtc |
398 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |
|
|
| T |
490863 |
atatacatgccccacatctctgcatgtaacgcgtc |
490829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 47488641 - 47488499
Alignment:
| Q |
25 |
aaaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacat |
124 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||||||||||||||||||| || || ||||| | || || ||||| || |||||||||||||||| |
|
|
| T |
47488641 |
aaaaactaagcgattaaatgaacatttcgaggcatgcaagcgccataaatgttataaaaaaggagacattcaagttctcttggtggagtctcaataacat |
47488542 |
T |
|
| Q |
125 |
gtaaatcaaaggagtctagagatagactaaagttagctaacca |
167 |
Q |
| |
|
||||||||||||||| | ||| |||||||| ||||||||||| |
|
|
| T |
47488541 |
gtaaatcaaaggagttcaaagagagactaaaattagctaacca |
47488499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 398
Target Start/End: Complemental strand, 47488500 - 47488318
Alignment:
| Q |
223 |
catgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaactaaaactgataagtcactt |
322 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||||||||||||||| ||| |||||||||||||||||| || ||| || |||||| | || || |
|
|
| T |
47488500 |
catgttttttagatcacaaatgcgacaaatcaaggtaggaacattcccattgatgttacatttccttgtttccctgttgaccaaaacttaggagctgctc |
47488401 |
T |
|
| Q |
323 |
tccacttgtaggtgtgtg-atctctgtct------ccgatccataccaatatacatgccccccatctctgcatgtaacacgtc |
398 |
Q |
| |
|
|||||||||||||||||| ||| |||||| | || |||||||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
47488400 |
tccacttgtaggtgtgtgaatcgctgtctttgagccatattcataccaatatacatgtcccacatctctgcatgtagcacgtc |
47488318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 40594435 - 40594548
Alignment:
| Q |
176 |
atatgtttccttcacttcatgtatggctgatctgaaacatgtcaagtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaa |
275 |
Q |
| |
|
||||| ||||||||| ||||| || | |||| |||| |||||||| |||||||||| | || |||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
40594435 |
atatgcttccttcacatcatgcatagttgatatgaa-catgtcaattcatgtttttcgg-tctcgaatgcgccaaatcaagataggaacattctcattaa |
40594532 |
T |
|
| Q |
276 |
tgttacatttccttgt |
291 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
40594533 |
tgttacaattctttgt |
40594548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 26 - 360
Target Start/End: Complemental strand, 24158291 - 24157956
Alignment:
| Q |
26 |
aaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatg |
125 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| || ||||||||| || ||||||| |||| ||||||||| ||||||||||||| | || |
|
|
| T |
24158291 |
aaaactaagcgattaatcgaacattccgagacatgcaagcgtcagaaatgtcataaaaaaggaaacgttgaagctctctaagaggagtctcaatcatttg |
24158192 |
T |
|
| Q |
126 |
taaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttcc-ttcacttcatgtatggctgatctgaaacatgtcaagtca |
224 |
Q |
| |
|
||||||||||| ||| |||||||||||| |||||| |||||||||| || ||||||| ||||| ||||||||| |||| || || ||| ||| ||| |
|
|
| T |
24158191 |
taaatcaaaggtgtccgaagatagactaaaattagcttgccaatctgctgatctgtttcctttcacgccatgtatggttgatatg-aatatgccaactca |
24158093 |
T |
|
| Q |
225 |
tgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaactaaaactgataagtcactttc |
324 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||||||||| || | ||| |||||| |||||| |||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
24158092 |
tgttttttaggtcacgaatgcgctgaatcaaggtaggaacttttccattgatgttatatttccatgttaccatgtcaactaaaagtgatgagtcgctttc |
24157993 |
T |
|
| Q |
325 |
cacttgtaggtgtgtgat-ctctgtctccgatccata |
360 |
Q |
| |
|
|||||| | |||||||| | |||||||||| ||||| |
|
|
| T |
24157992 |
cacttgcaattgtgtgatcccctgtctccgagccata |
24157956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 25 - 376
Target Start/End: Complemental strand, 36722251 - 36721893
Alignment:
| Q |
25 |
aaaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacat |
124 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| ||| ||| |||| |||| || ||||| | ||| | |||||||||||||||||||||||||| |
|
|
| T |
36722251 |
aaaaactaagcgattaaacgaacattttgaggcatgtaagtaccagaaatatcataaaaaaggagacattgaaactctctaggaggagtctcaataacat |
36722152 |
T |
|
| Q |
125 |
gtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctgaaacatgtcaagtca |
224 |
Q |
| |
|
|||||||||| ||||| | |||| ||||||| || |||| ||| || || || |||||| ||||| ||||||||| |||| || ||| || ||| ||| |
|
|
| T |
36722151 |
gtaaatcaaaagagtccaaagattgactaaaatttgctagccattccgccgatttgtttctttcacgccatgtatggttgatttg-aacttgacaactca |
36722053 |
T |
|
| Q |
225 |
tgttttttagatcacgaatgcgccaaatgaaggtaggaaca-ttccgattaatgttacatttccttgttaccatgtcaactaaaactgataagtcacttt |
323 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||||||||| |||| || ||||| |||||| | ||||||||||| || || ||| |||| || | |
|
|
| T |
36722052 |
tgttttttagatcacaaatgtgccaaatcaaggtaggaacatttcccgttgatgttgcatttcttagttaccatgtcgaccaagactttggagtcgctct |
36721953 |
T |
|
| Q |
324 |
ccacttgtaggtgtgtgat-ctctgtctccg------atccataccaatatacatgcccc |
376 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
36721952 |
ccacttgtaggtgtgtgatcctctgtcttcgagccatatccataccaatatacatgcccc |
36721893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 6468531 - 6468738
Alignment:
| Q |
26 |
aaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatg |
125 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||| |||| || | | ||||| | ||| |||||||||| ||||| |||||| | ||| |
|
|
| T |
6468531 |
aaaattaagcgattaatcgaacattccgaggcatgcaagcgccaaaaatatcttaagaaaggagacgttaaagctctctagaaggagactcaatcatatg |
6468630 |
T |
|
| Q |
126 |
taaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctgaaacatgtcaagtcat |
225 |
Q |
| |
|
||||||||| | ||| | |||||||||||| ||||||| |||||||||| || |||||||||||| |||||||| |||| || |||||| ||| |||| |
|
|
| T |
6468631 |
taaatcaaatgtgtccaaagatagactaaaattagctagccaatctgctgatttgtttccttcacgctatgtatggttgatatg-aacatgccaactcat |
6468729 |
T |
|
| Q |
226 |
gttttttag |
234 |
Q |
| |
|
|||||||| |
|
|
| T |
6468730 |
attttttag |
6468738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 343
Target Start/End: Complemental strand, 37105107 - 37104991
Alignment:
| Q |
227 |
ttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaactaaaactgataagtcactttcca |
326 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| ||||||| ||| ||||||||||| ||||| ||||| || |||||| |||| || || | |
|
|
| T |
37105107 |
ttttttagattacgaatgcgccaaattaaggtagaaacattctcattgatgttacatttttcagttactatgtcgaccaaaactttggagtcgctctcta |
37105008 |
T |
|
| Q |
327 |
cttgtaggtgtgtgatc |
343 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37105007 |
cttgtaggtgtgtgatc |
37104991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 102 - 391
Target Start/End: Complemental strand, 35875601 - 35875306
Alignment:
| Q |
102 |
tctaggaggagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatgg |
201 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||| |||||||||||| || |||| |||||| || || |||||||||||| ||| ||||| |
|
|
| T |
35875601 |
tctaggaggagtcacaataacatgtatatcaaaggagtctaaagatagactaaaatttgctagccaatccgccgatctgtttccttcacgccatatatgg |
35875502 |
T |
|
| Q |
202 |
ctgatctgaaacatgtcaagtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtca |
301 |
Q |
| |
|
|||| || ||| || ||| |||| ||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| |||||||| || |
|
|
| T |
35875501 |
ttgatttg-aacttgccaactcatagtttttagatcacgaatgcgccgaatcaaggtaggaacattctcattgatgttacatttcccagttaccatatcg |
35875403 |
T |
|
| Q |
302 |
actaaaactgataagtcactttccacttgtaggtgtgtgat-ctctgtct------ccgatccataccaatatacatgccccccatctctgcatgta |
391 |
Q |
| |
|
|| |||||| |||| || |||||||| ||||||||||| | |||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35875402 |
accaaaactttggagtcgctctccacttgaaggtgtgtgatcccctgtcttcaagccatatccataccaatatacatgccccacatctctgcatgta |
35875306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 10291767 - 10291903
Alignment:
| Q |
31 |
taagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatgtaaat |
130 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| ||||||||||||| || ||||| | |||| |||||||||| |||| ||||||| | |||||||| |
|
|
| T |
10291767 |
taagcgattaattgaacattccgaggcatgcaagcaccataaatgtcataaaaaaggagacgttgaagctctctagaaggaatctcaatcatatgtaaat |
10291866 |
T |
|
| Q |
131 |
caaaggagtctagagatagactaaagttagctaacca |
167 |
Q |
| |
|
|||||| || | ||||||| |||| ||||||||||| |
|
|
| T |
10291867 |
caaaggtatccaaagatagattaaaattagctaacca |
10291903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 40133324 - 40133217
Alignment:
| Q |
97 |
agctctctaggaggagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatg |
196 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||| |||| || ||||||| |||| ||| ||| |||||| ||| | |||||||||| | || |
|
|
| T |
40133324 |
agctctttagaaggagtctcaataacatataaatcaaatgagtttaaagatagattaaaattaactagtcaatctatcaatttatttccttcacattata |
40133225 |
T |
|
| Q |
197 |
tatggctg |
204 |
Q |
| |
|
|||||||| |
|
|
| T |
40133224 |
tatggctg |
40133217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 394
Target Start/End: Complemental strand, 39915332 - 39914958
Alignment:
| Q |
25 |
aaaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacat |
124 |
Q |
| |
|
||||| ||||| ||||| ||||| || |||||||||||| ||| | |||| | || || |||| | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
39915332 |
aaaaattaagcaattaaacgaacatttcgaggcatgcaaacgctaaaaatattattaaaaaggtgacattgaagctctctaggagaagtctcaataacat |
39915233 |
T |
|
| Q |
125 |
gtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctgaaacatgtcaagtca |
224 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||| || |||| ||||| || | |||||| |||||| |||||||||| |||| || ||| || ||| ||| |
|
|
| T |
39915232 |
gtaattcaaaggagtctaaagatagtctaaactttgctagccaattcgccgacatgttt-cttcacgtcatgtatggttgatttg-aacttgccaactca |
39915135 |
T |
|
| Q |
225 |
tgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaactaaaactgataagtcactttc |
324 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||| | ||||||| || |||||||||||||| ||||||||||| || |||||| |||| || || |
|
|
| T |
39915134 |
tgttttttagatcacgaatgtgccgaatcaagacacgaacattttcgttgatgttacatttcctagttaccatgtcgaccaaaactttggagtcgctctc |
39915035 |
T |
|
| Q |
325 |
cacttgtaggtgtgtgatctc-tgtct------ccgatccataccaatatacatgccccccatctctgcatgtaaca |
394 |
Q |
| |
|
||||||||||||||||||| | ||||| | ||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
39915034 |
cacttgtaggtgtgtgatcccttgtctttgagccttatccataccaatatatatgccccacatctctgcatgtaaca |
39914958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 45481823 - 45481696
Alignment:
| Q |
43 |
cgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatgtaaatcaaaggagtcta |
142 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||| || | || ||| |||||||| ||||||||||| || ||||| |||||||| | || | |
|
|
| T |
45481823 |
cgaacattccgaggcatgcaagcgccgaatctgtcatcaaagagaatattttgaagctctctcggaggagtctccattacatggaaatcaaaagcgttca |
45481724 |
T |
|
| Q |
143 |
gagatagactaaagttagctaaccaatc |
170 |
Q |
| |
|
|| || ||||||||||||||||||||| |
|
|
| T |
45481723 |
aagttaaactaaagttagctaaccaatc |
45481696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 9280826 - 9280770
Alignment:
| Q |
26 |
aaaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaa |
82 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| |||||||||||| |||||||||||| |
|
|
| T |
9280826 |
aaaactaagcgattaaacgaacatttcgaggtatgcaagcgccagaaatgtcatcaa |
9280770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 267
Target Start/End: Complemental strand, 33752822 - 33752662
Alignment:
| Q |
104 |
taggaggagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggct |
203 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||| ||||||| | | |||| || | ||| || || ||||||||||| ||||||| | |
|
|
| T |
33752822 |
taggatgagtctcaataacatataaatcaaaggagtctaaagatagattga--ttaggtagctaatatgtcgatttgtttccttcaagctgtgtatggtt |
33752725 |
T |
|
| Q |
204 |
gatctgaaacatgtcaagtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacatt |
267 |
Q |
| |
|
|||||| ||| |||||| ||||| | ||||| ||| | ||||||||||| |||||||||||||| |
|
|
| T |
33752724 |
gatctg-aacttgtcaattcatgatctttaggtcatggatgcgccaaatcaaggtaggaacatt |
33752662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 341
Target Start/End: Complemental strand, 4940717 - 4940481
Alignment:
| Q |
97 |
agctctctaggaggagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatg |
196 |
Q |
| |
|
|||||| ||| || |||||| ||||||||||||||||| || ||| |||||||||||| ||||||||| ||| ||| ||| | |||||||||| ||||| |
|
|
| T |
4940717 |
agctctttagaagaagtctccataacatgtaaatcaaat-agactaaagatagactaaaattagctaactaatttgccaatctatttccttcacgtcatg |
4940619 |
T |
|
| Q |
197 |
tatggctgatctgaaacatgtcaagtcatgttttttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttacca |
296 |
Q |
| |
|
| |||| || | | || ||| ||||| |||||||||||||||||||| |||||||||| || |||| | ||| || ||| ||| ||||| |||| |
|
|
| T |
4940618 |
----gttgatttgta-cttgccaactcatgcattttagatcacgaatgcgccgaatgaaggtaagagcatttccattgat--tacgttttcttgtcacca |
4940526 |
T |
|
| Q |
297 |
tgtcaactaaaactgataagtcactttccacttgtaggtgtgtga |
341 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
4940525 |
tgtctactaaaacttttaagtcactctccacttgtaggggtgtga |
4940481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 34076268 - 34076140
Alignment:
| Q |
27 |
aaactaagcgattaatcgaacgttccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatgt |
126 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||||||| ||| | ||||||||| || || || | ||| ||||||| | |||||||||||||||||||| |
|
|
| T |
34076268 |
aaactaagtgattaaacgaacattccgagacatgcaatcgcaagaaatgtcattaaaaatgagacattgaagctctccaagaggagtctcaataacatgt |
34076169 |
T |
|
| Q |
127 |
aaatcaaaggagtctagagatagactaaa |
155 |
Q |
| |
|
||||||||| |||| | ||||| |||||| |
|
|
| T |
34076168 |
aaatcaaagaagtccaaagataaactaaa |
34076140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 26722809 - 26722742
Alignment:
| Q |
104 |
taggaggagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatct |
171 |
Q |
| |
|
||||||||||||| || ||||| |||||||| | || || || || |||||||||||||||||||||| |
|
|
| T |
26722809 |
taggaggagtctccattacatggaaatcaaaagcgtttaaaggtaaactaaagttagctaaccaatct |
26722742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 5646325 - 5646245
Alignment:
| Q |
230 |
tttagatcacgaatgcgccaaatgaaggtaggaacattccgattaatgttacatttccttgttaccatgtcaactaaaact |
310 |
Q |
| |
|
||||| ||||||||||||||||| || ||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5646325 |
tttaggtcacgaatgcgccaaatcaacgtataaacattctcattgatgttacatttccttgttaccatgtcaactaaaact |
5646245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 268
Target Start/End: Complemental strand, 6372782 - 6372624
Alignment:
| Q |
110 |
gagtctcaataacatgtaaatcaaaggagtctagagatagactaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctg |
209 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| | ||||| |||||| ||||||| |||||| || || |||||||||||| || |||||| |||| || |
|
|
| T |
6372782 |
gagtctcaataatatgtaaatcaaagaagtccaaagatacactaaaattagctagccaatcagccgatttgtttccttcacgccaagtatggttgatttg |
6372683 |
T |
|
| Q |
210 |
aaacatgtcaagtcatg-ttttttagatcacgaatgcgccaaatgaaggtaggaacattc |
268 |
Q |
| |
|
||| || ||| ||||| |||||| ||||| |||||| || ||| |||||||| |||||| |
|
|
| T |
6372682 |
-aacttgccaactcatgtttttttggatcatgaatgcaccgaatcaaggtagggacattc |
6372624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 18891589 - 18891629
Alignment:
| Q |
108 |
aggagtctcaataacatgtaaatcaaaggagtctagagata |
148 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
18891589 |
aggaatctcagtaacatgtaaatcaaaggagtctaaagata |
18891629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0736 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0736
Description:
Target: scaffold0736; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 276
Target Start/End: Complemental strand, 6690 - 6465
Alignment:
| Q |
50 |
tccgaggcatgcaagcgccataaatgtcatcaagaaggaaatgttggagctctctaggaggagtctcaataacatgtaaatcaaaggagtctagagatag |
149 |
Q |
| |
|
||||||||||||||||||| | ||||||||| || | || ||| ||||| || ||||||||||| || ||||| || ||||| | || | || || |
|
|
| T |
6690 |
tccgaggcatgcaagcgccggatctgtcatcaaagagaatattttgaagctccctcggaggagtctccattacatggaagtcaaaagcgttcaaagttaa |
6591 |
T |
|
| Q |
150 |
actaaagttagctaaccaatctgctaatatgtttccttcacttcatgtatggctgatctgaaacatgtcaagtcatgttttttagatcacgaatgcgcca |
249 |
Q |
| |
|
||||||||||||||||||||| ||| | | || ||||||| || |||||| | || | ||||||| ||| |||||| ||| | ||||| ||||||| |
|
|
| T |
6590 |
actaaagttagctaaccaatcggctgctctattgccttcacgccaagtatggttaat-ttaaacatgccaattcatgtctttaaactcacggatgcgccg |
6492 |
T |
|
| Q |
250 |
aatgaaggtaggaacattccgattaat |
276 |
Q |
| |
|
||| ||||||||| || ||| |||||| |
|
|
| T |
6491 |
aatcaaggtaggagcactcccattaat |
6465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 6606 - 6568
Alignment:
| Q |
97 |
agctctctaggaggagtctcaataacatgtaaatcaaag |
135 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6606 |
agctatctaggagaagtctcaataacatgtaaatcaaag |
6568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University