View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_19 (Length: 404)
Name: NF12661_low_19
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 3088405 - 3088023
Alignment:
| Q |
1 |
gcctcggtcatattatctgcaatatctccagttaatggtannnnnnnnnnnnnaacaaaatctccagtaattaatatcatgaagtaaaataagtctaaaa |
100 |
Q |
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| T |
3088405 |
gcctcggtcatattatctgcaatatctccagttaatagtatttttttttttt-aacaaaatctccagtaattaatatcatgaagtaaaataagtctaaaa |
3088307 |
T |
|
| Q |
101 |
atttctgaaagggaaaataaatgacagacatgagttccttacatctacgatcagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgat |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088306 |
atttctgaaagggaaaaaaaatgacagacatgagttccttacatctacgatcagatgttccctctttgtaatgagaaagttgagaagtgaaatttttgat |
3088207 |
T |
|
| Q |
201 |
agctcctgcaacacacatatcctcatggcagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaataagagc |
300 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3088206 |
agctcctgcaacacacatgtcctcaaggcagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaatatgagc |
3088107 |
T |
|
| Q |
301 |
acatgacaaaaataactacatatacaaatagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatg |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088106 |
acatgacaaaaataactacatatacaaatagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatg |
3088023 |
T |
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