View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_20 (Length: 394)
Name: NF12661_low_20
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_20 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 39293966 - 39294328
Alignment:
| Q |
19 |
agcggaagacttcaatatgttgatgaggaaagtagtggaggtgggggcaattcacaggatacaaatttcacatgggggaagatcttttcactcatttaga |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39293966 |
agcggaagacttcaatatgttgatgaggagagtagtggaggtgggggcaattcacaggatacaaatttgacatgggggaagatcttttcactcatttaga |
39294065 |
T |
|
| Q |
119 |
atacgccgatgataacttgattattggtgagaaaaagtggtcgaatattcgaatcattaaggcaaatatgttattatttgaagtaatgttgggtctaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39294066 |
atacgccgatgataacttgattattggtgagaaaaagtggtcgaatattcgaatcattaaggcaaatatgttattatttgaagtaatgttgggtctaaaa |
39294165 |
T |
|
| Q |
219 |
atcaattctcataaaagtttatcgatgggagtcattatctctcagaggtagtaggaagaggcgaccaatatcctaaattgtaaaataggatccactatgt |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39294166 |
atcagttctcataaaagtttatcgatgggagtcattatctctcagaggtagtaggaagaggcgaccaatatcctaaattgtaaaataggatccactatgt |
39294265 |
T |
|
| Q |
319 |
ttaagtacattggtttaccaatcggagcaagtccgacgataatagatacttggcatccagtga |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39294266 |
ttaagtacattggtttaccaatcggagcaagtccgacgataataaatacttggcatccagtga |
39294328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 381
Target Start/End: Original strand, 32668586 - 32668740
Alignment:
| Q |
227 |
tcataaaagtttatcgatgggagtcattatctctcagaggtagtaggaagaggcgaccaatatcctaaattgtaaaataggatccactatgtttaagtac |
326 |
Q |
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| T |
32668586 |
tcataaaagtttattagtcggagtcaatatatcccagaggtgggtgggagaggcggctaatgtattaaaatgtaaaataggatttactctgtttaagtaa |
32668685 |
T |
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| Q |
327 |
attggtttaccaatcggagcaagtccgacgataatagatacttggcatccagtga |
381 |
Q |
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|||||||||||||| |||||| || || |||| ||||||||||||||||||||| |
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| T |
32668686 |
cttggtttaccaatcagagcaaatctgaggatattagatacttggcatccagtga |
32668740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 375
Target Start/End: Complemental strand, 27119923 - 27119684
Alignment:
| Q |
135 |
ttgattattggtgagaaaaagtggtcgaatattcgaatcattaaggcaaatatgttattatttgaagtaatgttgggtctaaaaatcaattctcataaaa |
234 |
Q |
| |
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|||||||||||||| |||||||||| |||||| |||||||||||| ||| | |||||||||||||||||| | | ||| | | |||| |||||||| |
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| T |
27119923 |
ttgattattggtgaaaaaaagtggtagaatatcataatcattaaggccaatctactattatttgaagtaatgtcgagcttaatagtaaattttcataaaa |
27119824 |
T |
|
| Q |
235 |
gtttatcgatgggagtcattatctctcagaggtagtaggaagaggcgaccaatatcctaaattgtaaaataggatccactatgtttaagtacattggttt |
334 |
Q |
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| T |
27119823 |
gtttattggtgtgagtcaataattctcagaattggttcaaagaggtggctaatatcctaaattgtaagattggatcaac-acctttaagtaccatggtct |
27119725 |
T |
|
| Q |
335 |
accaatcggagcaagtccgacgataatagatacttggcatc |
375 |
Q |
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| T |
27119724 |
accaaccgaggcaaatccaaggagaatagatacatggcatc |
27119684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 348
Target Start/End: Complemental strand, 5670657 - 5670445
Alignment:
| Q |
136 |
tgattattggtgagaaaaagtggtcgaatattcgaatcattaaggcaaatatgttattatttgaagtaatgttgggtctaaaaatcaattctcataaaag |
235 |
Q |
| |
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||||||||| || || ||| |||||||||| |||||| ||| | ||||||||||||||||||||||||| | ||||| |||||| ||||||||| |
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| T |
5670657 |
tgattattgacgaaaagaagcggtcgaatatcataatcatcaagacgaatatgttattatttgaagtaatgtctgtcttaaaagtcaattttcataaaag |
5670558 |
T |
|
| Q |
236 |
tttatcgatgggagtcattatctctcagaggtagtaggaagaggcgaccaatatcctaaattgtaaaataggatccactatgtttaagtacattggttta |
335 |
Q |
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||||| | ||||||| | ||| |||| | | || |||||||||| | ||||||||| ||| ||| || |||||||| ||||||||| |||||||| |
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| T |
5670557 |
tttattggtgggagttaatattcctcaaaattggttggaagaggcggctaatatcctatattataagattggatccacaccatttaagtaccttggttta |
5670458 |
T |
|
| Q |
336 |
ccaatcggagcaa |
348 |
Q |
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||||||| |||| |
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| T |
5670457 |
tcaatcggggcaa |
5670445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 348
Target Start/End: Complemental strand, 23703576 - 23703252
Alignment:
| Q |
23 |
gaagacttcaatatgttgatgaggaaagtagtggaggtgggggcaattcacaggatacaaatttcacatgggggaagatcttttcactcatttagaatac |
122 |
Q |
| |
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|||| ||| |||||||||||||||| | |||||||| ||| ||||||||| ||||| |||| ||| ||||||||| | | || |||||| |||| |
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| T |
23703576 |
gaaggctttaatatgttgatgaggatggcagtggaggagggaa-aattcacagaatacatatttgacaagggggaagaccggctaacacatttacaatat |
23703478 |
T |
|
| Q |
123 |
gccgatgataacttgattattggtgagaaaaagtggtcgaatattcgaatcattaaggcaaatatgttattatttgaagtaatgttgggtctaaaaatca |
222 |
Q |
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| || |||| ||||||||| |||| |||||||||| |||||| ||| | ||||||||| | | | |||||||||||||| ||||||||| ||| |
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| T |
23703477 |
gatgacgatacattgattattagtgaaaaaaagtggttgaatatcaaaattaaaaaggcaaatttacttctttttgaagtaatgtttggtctaaaagtca |
23703378 |
T |
|
| Q |
223 |
attctcataaaagtttatcgatgggagtcattatctctcagaggtagtaggaagaggcgaccaatatcctaaattgtaaaataggatccactatgtttaa |
322 |
Q |
| |
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| | ||||||||||| || | ||||||||| ||| || || || | | ||||||||| | || ||||||||||||||||| ||| ||| | ||||| |
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| T |
23703377 |
actttcataaaagttcattggtgggagtcaatatatcacaaagatgggtggaagaggcagctaaagtcctaaattgtaaaatatgatgtactctatttaa |
23703278 |
T |
|
| Q |
323 |
gtacattggtttaccaatcggagcaa |
348 |
Q |
| |
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||| |||||||||| || ||||||| |
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| T |
23703277 |
gtatcttggtttacctattggagcaa |
23703252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 313
Target Start/End: Complemental strand, 22639360 - 22639191
Alignment:
| Q |
144 |
ggtgagaaaaagtggtcgaatattcgaatcattaaggcaaatatgttattatttgaagtaatgttgggtctaaaaatcaattctcataaaagtttatcga |
243 |
Q |
| |
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|||||||| |||||||| |||||| | || || |||| || || ||||||||||| |||||||||| ||| || |||||| |||||||| ||||| || |
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| T |
22639360 |
ggtgagaagaagtggtcaaatattatagtcgttgaggccgatttgctattatttgaactaatgttgggcctacaagtcaattttcataaaaatttattga |
22639261 |
T |
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| Q |
244 |
tgggagtcattatctctcagaggtagtaggaagaggcgaccaatatcctaaattgtaaaataggatccac |
313 |
Q |
| |
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||||| ||| ||| ||| || | | || |||||||| | | ||||||||| |||||| || |||||||| |
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|
| T |
22639260 |
tgggattcaatatttcttagtgttggttggaagaggtggctaatatcctacattgtatgattggatccac |
22639191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 59457 - 59355
Alignment:
| Q |
138 |
attattggtgagaaaaagtggtcgaatattcgaatcattaaggcaaatatgttattatttgaagtaatgttgggtctaaaaatcaattctcataaaagtt |
237 |
Q |
| |
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|||||| |||| || |||||||||||||| |||||||||||| ||| | |||||||||||||||||||| || ||||| | ||| |||||||| || |
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| T |
59457 |
attattagtgaaaagaagtggtcgaatatcagaatcattaaggtcaatctactattatttgaagtaatgttgagtttaaaagttaatcttcataaaattt |
59358 |
T |
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| Q |
238 |
tat |
240 |
Q |
| |
|
||| |
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|
| T |
59357 |
tat |
59355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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