View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_21 (Length: 390)
Name: NF12661_low_21
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 113 - 374
Target Start/End: Original strand, 6188300 - 6188561
Alignment:
| Q |
113 |
caaattcagcatacaatataactatatacagtttcaaaagttacttaggaatatatgtaaacataagaattaatgtgagtttagaggaattaaatggaat |
212 |
Q |
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| T |
6188300 |
caaagtcagcatacaatataactatgtacagtttcaaaagttacttaggagtatatgtaaacataagaattaatatgagtttagaggaattaaatggaat |
6188399 |
T |
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| Q |
213 |
acttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagctttccactaagacactttgtctacatgagatttactgtggg |
312 |
Q |
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| T |
6188400 |
acttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagctttccactcagacactttgtctacatgagatttactgtggg |
6188499 |
T |
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| Q |
313 |
caagttctctctcaaatcttgcaaatgccatctggtaactctccttctgatgacgtacatgt |
374 |
Q |
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| T |
6188500 |
caagttctctctcaaatcttgcaaatgccatctggtaactctccttctgatgacgtacatgt |
6188561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 172 - 374
Target Start/End: Original strand, 6179588 - 6179787
Alignment:
| Q |
172 |
aacataagaattaatgtgagtttagaggaattaaatggaatacttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagc |
271 |
Q |
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| T |
6179588 |
aacatgagaattaatg--agtttagaggaat-aaattcaatacgtaccgatatttgcgagagtcccatccagatatattggcagccaatttgagagcagc |
6179684 |
T |
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| Q |
272 |
tttccactaagacactttgtctacatgagatttactgtgggcaagttctctctcaaatcttgcaaatgccatctggtaactctccttctgatgacgtaca |
371 |
Q |
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| T |
6179685 |
tttccactcggacaccttgtctagttgagatttactgtgggcgagatctctatcatatcttgcaaatgccatctcgtaactttctttctgatgacgaaca |
6179784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 201 - 374
Target Start/End: Original strand, 6145354 - 6145527
Alignment:
| Q |
201 |
attaaatggaatacttaccgatatttgcgagagtcccatccagatatattggcagccaaattgagagcagctttccactaagacactttgtctacatgag |
300 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| | || |||| || |
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| T |
6145354 |
attaaattaaatacataccgatatttgcgagagtcccatccagatatattggcagccatcttgagagcagctctccactcggacactctatcaacataag |
6145453 |
T |
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| Q |
301 |
atttactgtgggcaagttctctctcaaatcttgcaaatgccatctggtaactctccttctgatgacgtacatgt |
374 |
Q |
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| T |
6145454 |
atatgctgttgacgagatctctctcatatcttgcaaatgccatctcgtaactctctttctgatgacgaacatgt |
6145527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 6188200 - 6188242
Alignment:
| Q |
13 |
tgaacaaggagactagcccttgacatgtagcaagacaactgtt |
55 |
Q |
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| T |
6188200 |
tgaacaaggagactagcccttgacatgtagcaagacaactgtt |
6188242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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