View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_22 (Length: 385)
Name: NF12661_low_22
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 2346587 - 2346924
Alignment:
| Q |
11 |
aagcaaaggcaaaaggggatattagaaaattttaggtgagtgggggaaaagttaaactagctatccttttcagaatagaaagtggacgaatttttaaaat |
110 |
Q |
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| T |
2346587 |
aagcatagtcaaaaggggatattagaaaattttaggtgagtgggggaaaagttaaactcgctatccttttcagaatagaaagtggatgaatttttaaaat |
2346686 |
T |
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| Q |
111 |
aggaaattaaaaagtggatgtaaaggataatattagggttgaaaataaatgaatttataaaagt-nnnnnnntagttgggcgtcacaatagtaataaaat |
209 |
Q |
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| T |
2346687 |
aggaaattaaaaagtggatgtaaaggataatattagggttgaaagtaaatgaatttataaaagtaaaaaaaatagttgggcgtcacaatagtaataaaat |
2346786 |
T |
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| Q |
210 |
attaatttgattaaaaatatattttacaaaagcaacttgattcatgaatctccaccgtatttaaaagtggttttgtatacaacacttacaatacctggtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
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| T |
2346787 |
attaatttgattaaaaatatattttacaaaagcaacttgattcatgaatctccaccttattttaaagt-------------acacttacaatac------ |
2346867 |
T |
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| Q |
310 |
gctggtgctataacttcggttatagaaagaacaatatatttgaaacagcattgctaaa |
367 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2346868 |
-ctggtgctataacttcggttctagaaagaacaatatatttgaaacagcattgctaaa |
2346924 |
T |
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