View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12661_low_23 (Length: 376)

Name: NF12661_low_23
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12661_low_23
NF12661_low_23
[»] chr8 (2 HSPs)
chr8 (19-348)||(20135352-20135681)
chr8 (113-157)||(21309186-21309230)
[»] chr7 (2 HSPs)
chr7 (19-348)||(44356390-44356719)
chr7 (103-159)||(13059703-13059759)
[»] chr5 (1 HSPs)
chr5 (69-159)||(21110669-21110759)
[»] chr1 (2 HSPs)
chr1 (104-162)||(2890799-2890857)
chr1 (102-162)||(14972572-14972632)
[»] chr4 (1 HSPs)
chr4 (100-160)||(14554186-14554246)
[»] chr3 (1 HSPs)
chr3 (113-164)||(52348541-52348592)
[»] scaffold0031 (1 HSPs)
scaffold0031 (97-155)||(75148-75206)
[»] chr2 (1 HSPs)
chr2 (102-162)||(45721356-45721416)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 20135681 - 20135352
Alignment:
Q  19 ctaattcccattccccttgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagc 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20135681 ctaactcccattccccttgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagc 20135582  T
Q  119 atcctcccccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttga 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20135581 gtcctcccccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttga 20135482  T
Q  219 ggcgtcaaaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctga 318  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20135481 ggcatcaaaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctga 20135382  T
Q  319 agaaatcatcattccaagcatgtatgggaa 348  Q
    ||||||||||||||||||||||||||||||    
T  20135381 agaaatcatcattccaagcatgtatgggaa 20135352  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 21309230 - 21309186
Alignment:
Q  113 aaaagcatcctcccccaaacaacatccccattcctccaccaactt 157  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||    
T  21309230 aaaagcatcctcccccaaattacacccccattcctccaccaactt 21309186  T

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Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 44356390 - 44356719
Alignment:
Q  19 ctaattcccattccccttgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagc 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44356390 ctaactcccattccccttgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagc 44356489  T
Q  119 atcctcccccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttga 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44356490 gtcctcccccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttga 44356589  T
Q  219 ggcgtcaaaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctga 318  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44356590 ggcatcaaaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctga 44356689  T
Q  319 agaaatcatcattccaagcatgtatgggaa 348  Q
    ||||||||||||||||||||||||||||||    
T  44356690 agaaatcatcattccaagcatgtatgggaa 44356719  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 13059759 - 13059703
Alignment:
Q  103 cctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaa 159  Q
    |||||||||||||  ||||||||||||||   || ||||||||||||||||| ||||    
T  13059759 cctccgtcataaacacatcctcccccaaattgcacccccattcctccaccaatttaa 13059703  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 21110669 - 21110759
Alignment:
Q  69 tgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaa 159  Q
    |||||| | ||||||||||||  |||  |||||||||||||||| ||||||||||||||||||  ||| ||||| ||||||||||||||||    
T  21110669 tgcaatcatgtttccggtctagaatcgatcacctcctccgtcatgaaagcatcctcccccaaattacaaccccactcctccaccaacttaa 21110759  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 2890857 - 2890799
Alignment:
Q  104 ctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 162  Q
    |||||||||||| ||||||||||||||    ||||||||||||||||||| ||||||||    
T  2890857 ctccgtcataaaggcatcctcccccaagttgcatccccattcctccaccagcttaataa 2890799  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 14972632 - 14972572
Alignment:
Q  102 tcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 162  Q
    |||||| ||| ||| |||||||||||||||  ||| ||||| |||||||||||||| ||||    
T  14972632 tcctccctcaaaaaggcatcctcccccaaattacacccccactcctccaccaacttgataa 14972572  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 14554186 - 14554246
Alignment:
Q  100 cctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaat 160  Q
    |||||||||||| ||||||||| ||||| |||  ||||||||||| ||||||||| |||||    
T  14554186 cctcctccgtcaaaaaagcatcatcccctaaatgacatccccatttctccaccaatttaat 14554246  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 52348541 - 52348592
Alignment:
Q  113 aaaagcatcctcccccaaacaacatccccattcctccaccaacttaataaaa 164  Q
    ||||||||| || ||||||  |||||||| ||||||||||||||||||||||    
T  52348541 aaaagcatcttctcccaaattacatccccgttcctccaccaacttaataaaa 52348592  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 75148 - 75206
Alignment:
Q  97 tcacctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaac 155  Q
    ||||||||||||||||||| |||||||| |||||    |||||||| ||||||||||||    
T  75148 tcacctcctccgtcataaatgcatcctcacccaagttgcatccccactcctccaccaac 75206  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 45721356 - 45721416
Alignment:
Q  102 tcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 162  Q
    |||||| ||| ||| |||||||||||||||  ||| ||||| |||||||||||||| ||||    
T  45721356 tcctccttcaaaaaggcatcctcccccaaattacacccccactcctccaccaacttgataa 45721416  T

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