View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12661_low_29 (Length: 315)
Name: NF12661_low_29
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_29 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0194 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 29105118 - 29104804
Alignment:
| Q |
1 |
agaagcacttatacaaaaatggaactccgaaacctcggattatgccaaaataacttccctcttctacaataacaaatgtgaagccattcagtacattcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| | |||||||||||||| |||||| |
|
|
| T |
29105118 |
agaagcacttatacaaaaatggaactccgaaacctcggattatgccaaagtaacttccatcttctacaacgacagaaacgaagccattcagtatattcac |
29105019 |
T |
|
| Q |
101 |
cacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgcacaaaacctaatgcaaatcgctatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29105018 |
cacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgctcaaaacctaatgcaaatcgctatga |
29104919 |
T |
|
| Q |
201 |
agaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgcttagacgcagaatccttctctgtcggatcctccagaactcctttctgttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29104918 |
agaggctccaaaaagagttttaccagatattaaccatgaaccaggcctgcttagacgctgaatccttctctgtcggatcctccagaacttctttctgttc |
29104819 |
T |
|
| Q |
301 |
ttttgatggaggaac |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29104818 |
ttttgatggaggaac |
29104804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 29090857 - 29090543
Alignment:
| Q |
1 |
agaagcacttatacaaaaatggaactccgaaacctcggattatgccaaaataacttccctcttctacaataacaaatgtgaagccattcagtacattcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29090857 |
agaagcacttatacaaaaatggaactccgaaacctcggattatgccaaaataacttccctcttctacaacaacaaatgtgaagccattcagtacattcac |
29090758 |
T |
|
| Q |
101 |
cacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgcacaaaacctaatgcaaatcgctatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
29090757 |
cacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccagaactcatccacgcacaaaacctaatgcaaattgctatga |
29090658 |
T |
|
| Q |
201 |
agaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgcttagacgcagaatccttctctgtcggatcctccagaactcctttctgttc |
300 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||| | ||||||| | ||||||||||| || |||||| || ||| ||||| |||| |
|
|
| T |
29090657 |
agaggctccaaaaagaattctaccagatcttaaccatgaaccaggcatacttagactctgaatccttctccatcagatcctttagcacttctttcggttc |
29090558 |
T |
|
| Q |
301 |
ttttgatggaggaac |
315 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
29090557 |
ttttgatggtggaac |
29090543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 11539 - 11614
Alignment:
| Q |
3 |
aagcacttatacaaaaatggaactccgaaacctcggattatgccaaaataacttccctcttctacaataacaaatg |
78 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||| || |||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
11539 |
aagcacttatactaaaatggaaatttgaaacctcccatgatgccaaagtaacttccctcttctgcaacgacaaatg |
11614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University