View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_30 (Length: 313)
Name: NF12661_low_30
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 14757728 - 14757579
Alignment:
| Q |
16 |
caaatcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatact |
115 |
Q |
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| T |
14757728 |
caaatcatgttcgtcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatact |
14757629 |
T |
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| Q |
116 |
ctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
165 |
Q |
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| T |
14757628 |
ctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
14757579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 164 - 302
Target Start/End: Complemental strand, 14757520 - 14757382
Alignment:
| Q |
164 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757520 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
14757421 |
T |
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| Q |
264 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
302 |
Q |
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| T |
14757420 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
14757382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 164 - 302
Target Start/End: Complemental strand, 3613697 - 3613559
Alignment:
| Q |
164 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
263 |
Q |
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| T |
3613697 |
caagttgttgcatactgtattcatttatcttcaaattcaaccgattactagcgacatcgttgagattcctccaagcaacatcagtgacagacatgttatc |
3613598 |
T |
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| Q |
264 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
302 |
Q |
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| T |
3613597 |
agcattcaaaatgcccatatcacgtacatcaaagttcat |
3613559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 3613905 - 3613756
Alignment:
| Q |
16 |
caaatcacgttcatcggctttccggaacacatctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatact |
115 |
Q |
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||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||| |
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| T |
3613905 |
caaatcacgttcatcggttttccagaacatgtctctttctcccaagctaaacaagccctaacattctcttgatttgcaaaagaatccgtccaacaatact |
3613806 |
T |
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| Q |
116 |
ctttcatcattcttgaagttggatgaggcataataccacaacctacccca |
165 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3613805 |
ctttcaaggttcttgaagttggatgaggcataataccagaacctacccca |
3613756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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