View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12661_low_31 (Length: 311)

Name: NF12661_low_31
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12661_low_31
NF12661_low_31
[»] scaffold0438 (5 HSPs)
scaffold0438 (75-262)||(8931-9118)
scaffold0438 (75-256)||(12051-12232)
scaffold0438 (122-259)||(11915-12052)
scaffold0438 (1-54)||(9119-9172)
scaffold0438 (1-54)||(12233-12286)
[»] chr8 (7 HSPs)
chr8 (75-262)||(26294553-26294740)
chr8 (75-262)||(26307810-26307997)
chr8 (75-256)||(26341890-26342071)
chr8 (122-259)||(26341754-26341891)
chr8 (1-54)||(26294741-26294794)
chr8 (1-54)||(26307998-26308051)
chr8 (1-54)||(26342072-26342125)
[»] chr5 (1 HSPs)
chr5 (121-236)||(33953647-33953759)
[»] chr3 (7 HSPs)
chr3 (65-179)||(1301795-1301897)
chr3 (190-262)||(5359447-5359520)
chr3 (190-246)||(7421084-7421140)
chr3 (75-127)||(1187758-1187810)
chr3 (73-126)||(482401-482454)
chr3 (146-182)||(477513-477549)
chr3 (138-178)||(482361-482401)


Alignment Details
Target: scaffold0438 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 9118 - 8931
Alignment:
Q  75 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattatacac 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9118 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattacacac 9019  T
Q  175 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 262  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9018 attctagtattattaattagttctctatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 8931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 12232 - 12051
Alignment:
Q  75 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattatacac 174  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12232 aagctactctttcatgcgattcaagttgcatgcatgcaagcaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattacacac 12133  T
Q  175 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaac 256  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12132 attctagtattattaattagttctttatttctatcttcttctacatataacaattatttctattttcctttctttcaccaac 12051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 12052 - 11915
Alignment:
Q  122 acacattcatgtaaatacattcaaggaaaatcaattccattaccattatacacattctagtattattaattagttctttatttctatcttcttcaacata 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12052 acacattcatgtaaatacattcaaggaaaatcaattccattaccattacacacattctagtattattaattagttctttatttctatcttcttcaacata 11953  T
Q  222 taacaattatttctattttcctttctttcaccaacctt 259  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11952 taacaattatttctattttcctttctttcaccaacctt 11915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9172 - 9119
Alignment:
Q  1 catacacacattcatgagcaagagcatatcttaaagttgcagagcatctatgag 54  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||||||||||    
T  9172 catacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag 9119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12286 - 12233
Alignment:
Q  1 catacacacattcatgagcaagagcatatcttaaagttgcagagcatctatgag 54  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||||||||||    
T  12286 catacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag 12233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 26294740 - 26294553
Alignment:
Q  75 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattatacac 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26294740 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattacacac 26294641  T
Q  175 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 262  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26294640 attctagtattattaattagttctctatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 26294553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 26307997 - 26307810
Alignment:
Q  75 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattatacac 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26307997 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattacacac 26307898  T
Q  175 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 262  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26307897 attctagtattattaattagttctctatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaaccttcaa 26307810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 26342071 - 26341890
Alignment:
Q  75 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattatacac 174  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26342071 aagctactctttcatgcgattcaagttgcatgcatgcaagcaaacacacacattcatgtaaatacattcaaggaaaatcaattccattaccattacacac 26341972  T
Q  175 attctagtattattaattagttctttatttctatcttcttcaacatataacaattatttctattttcctttctttcaccaac 256  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26341971 attctagtattattaattagttctttatttctatcttcttctacatataacaattatttctattttcctttctttcaccaac 26341890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 26341891 - 26341754
Alignment:
Q  122 acacattcatgtaaatacattcaaggaaaatcaattccattaccattatacacattctagtattattaattagttctttatttctatcttcttcaacata 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26341891 acacattcatgtaaatacattcaaggaaaatcaattccattaccattacacacattctagtattattaattagttctttatttctatcttcttcaacata 26341792  T
Q  222 taacaattatttctattttcctttctttcaccaacctt 259  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26341791 taacaattatttctattttcctttctttcaccaacctt 26341754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26294794 - 26294741
Alignment:
Q  1 catacacacattcatgagcaagagcatatcttaaagttgcagagcatctatgag 54  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||||||||||    
T  26294794 catacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag 26294741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26308051 - 26307998
Alignment:
Q  1 catacacacattcatgagcaagagcatatcttaaagttgcagagcatctatgag 54  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||||||||||    
T  26308051 catacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag 26307998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26342125 - 26342072
Alignment:
Q  1 catacacacattcatgagcaagagcatatcttaaagttgcagagcatctatgag 54  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||||||||||    
T  26342125 catacacacattaatgagcaagagcatatctcaaagttgcggagcatctatgag 26342072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 33953647 - 33953759
Alignment:
Q  121 cacacattcatgtaaatacattcaaggaaaatcaattccattaccattatacacattctagtattattaattagttctttatttctatcttcttcaacat 220  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||||||||||||||||||    
T  33953647 cacacattcatggaaatacattcaaggaaaatcaattccattagcattatacacattctag---tattaataagttctttatttctatcttcttcaacat 33953743  T
Q  221 ataacaattatttcta 236  Q
    ||||||||||||||||    
T  33953744 ataacaattatttcta 33953759  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 1301795 - 1301897
Alignment:
Q  65 taattctatcaagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacattcatgtaaatacattcaaggaaaatcaattccattac 164  Q
    |||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||            |||||| ||||||||||||| | |||    
T  1301795 taattcaatcaagctactctatcatgtgattcaagttgtatgcatgcaaacaaacacacaca------------cattcatggaaaatcaattctaatac 1301882  T
Q  165 cattatacacattct 179  Q
    |||||||||||||||    
T  1301883 cattatacacattct 1301897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 5359447 - 5359520
Alignment:
Q  190 attagttctttatttctatcttcttcaacatataacaattatttctattttccttt-ctttcaccaaccttcaa 262  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||| ||||||| || ||||||||||||||    
T  5359447 attagttctttattcctatattcttcaacgtataacaattatttctatcttcctttcctctcaccaaccttcaa 5359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 7421084 - 7421140
Alignment:
Q  190 attagttctttatttctatcttcttcaacatataacaattatttctattttcctttc 246  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||  |||||||    
T  7421084 attagttctttattcctatcttcttaaacatataagaattatttctatcatcctttc 7421140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 1187810 - 1187758
Alignment:
Q  75 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacat 127  Q
    |||||||||| ||||| ||| ||||||||||||||| ||| ||||||||||||    
T  1187810 aagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacat 1187758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 482454 - 482401
Alignment:
Q  73 tcaagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacaca 126  Q
    |||| |||||||| |||| || ||||| |||||||||||| |||||||||||||    
T  482454 tcaaactactcttacatgtgactcaagatgcatgcatgcacacaaacacacaca 482401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 477549 - 477513
Alignment:
Q  146 ggaaaatcaattccattaccattatacacattctagt 182  Q
    |||||||||||| |||||||||||| |||||||||||    
T  477549 ggaaaatcaatttcattaccattatgcacattctagt 477513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 482401 - 482361
Alignment:
Q  138 acattcaaggaaaatcaattccattaccattatacacattc 178  Q
    ||||||| |||||||||||| |||||||||||| |||||||    
T  482401 acattcatggaaaatcaatttcattaccattatgcacattc 482361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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