View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_34 (Length: 295)
Name: NF12661_low_34
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 17073273 - 17073049
Alignment:
| Q |
14 |
agaagaatgttgattcggtaagtactgaaacggagacacgtaccattacggtacaacaacaagaaataccaaaggaaccagagtagcacacaaccattgt |
113 |
Q |
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| T |
17073273 |
agaagaatgttgattcggtaagtactgaaacggagacacgtaccattacggtacaacaacaagaaataccaaaggaactagagtagcacgcaaccattgt |
17073174 |
T |
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| Q |
114 |
agtggataagcctgtgcaacattcggccattgaggatgtttcagatgagcnnnnnnntatgggagatgattcctctataattgaaggaaattttgtgcag |
213 |
Q |
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| T |
17073173 |
agtggataagcc--ttcaacattcggccattgaagatgtttcagatgagcaaaaaaatatgggagatgattcctctataattgaaggaaattttgtgcag |
17073076 |
T |
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| Q |
214 |
caattggaagacactgtcgcgaatatc |
240 |
Q |
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| T |
17073075 |
caattggaagacactgtcgcgaatatc |
17073049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 11746650 - 11746433
Alignment:
| Q |
16 |
aagaatgttgattcggtaagtactgaaacggagacacgtaccattacggtacaacaacaagaaataccaaaggaaccagagtagcacacaaccattgtag |
115 |
Q |
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| T |
11746650 |
aagaatgatgatccgttaattactgaaacggagacacataccattacagtacaacagcaagaaaaaccaaaggaaacagagcagcacgcaaccattgtag |
11746551 |
T |
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| Q |
116 |
tggataagcctgtgcaacattcggccattgaggatgtttcagatgagcnnnnnnntatgggagatgattcctctataattgaaggaaattttgtgcagca |
215 |
Q |
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| T |
11746550 |
tagatgagcctgtgcaa-------ccattgtggatgtttcagatgagcaacaaaatacgggagttgattcctctatgattgacggaaatattgtgcagca |
11746458 |
T |
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| Q |
216 |
attggaagacactgtcgcgaatatc |
240 |
Q |
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| T |
11746457 |
attggaagacactgtcgcgaatatc |
11746433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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