View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_38 (Length: 256)
Name: NF12661_low_38
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 36640666 - 36640902
Alignment:
| Q |
14 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
113 |
Q |
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| T |
36640666 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
36640765 |
T |
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| Q |
114 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
213 |
Q |
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| T |
36640766 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagc--cacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
36640863 |
T |
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| Q |
214 |
acgttttgctaaagcatctgcaaatgagttcatctctct |
252 |
Q |
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| T |
36640864 |
acgttttgctaaagcatctgcaaatgagttcatttctct |
36640902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 36633302 - 36633536
Alignment:
| Q |
18 |
cagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttct |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36633302 |
cagcaacacaatcccacctatcagctaaacacaccccaccacaacagcatccgaatcagtcaggacagcagcaaacagacagatatacaaatagatttct |
36633401 |
T |
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| Q |
118 |
ctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgt |
217 |
Q |
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| T |
36633402 |
ctatttctgtaaaataaattttgaattgcaaactagcaagcctcacacactttaatccataggccaccaaattctctgcccctccatattcacgccactt |
36633501 |
T |
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| Q |
218 |
tttgctaaagcatctgcaaatgagttcatctctct |
252 |
Q |
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| T |
36633502 |
tttgctaaagcatctgcaaatgagttcatttctct |
36633536 |
T |
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