View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_40 (Length: 254)
Name: NF12661_low_40
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_40 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 31698803 - 31699041
Alignment:
| Q |
14 |
agatgaagaggtagatggagacatagaagaagtgtgaaataggattggatatggaaaccaatactcatttaacataacatacttaaatgcccagatgcaa |
113 |
Q |
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| T |
31698803 |
agatgaagaggtagatggagaca--gaagaagtgtgaaataggattggatatggaaaccaatactcatttaacataacatccttaaatgcccagatgcaa |
31698900 |
T |
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| Q |
114 |
ccatcttgcaagacatttgcaccctttgtgattgtgtgataaaccaaaaaatacactccttggatctgaaatccattttaggctgattgtaaggcatcag |
213 |
Q |
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| T |
31698901 |
ccatcttgcaagacatttgcaccctttgtgattgtgtgataaacccaaaaatacactccttggatctgaaatccattttaggctgattgtaaggcatcag |
31699000 |
T |
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| Q |
214 |
aaatgaaaagcaagcatgtccgatgttcttaaatccttgtt |
254 |
Q |
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| T |
31699001 |
aaatgaaaagcaagcatgtccgatgttcttaaatccttgtt |
31699041 |
T |
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