View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12661_low_41 (Length: 250)
Name: NF12661_low_41
Description: NF12661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12661_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 39315282 - 39315102
Alignment:
| Q |
1 |
tgttccaagaattcttcaatagcatctgatgataaatctgcaannnnnnnnnnnnnnnnnnagtcaagccccactagaaatggttggttttccattatgt |
100 |
Q |
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| T |
39315282 |
tgttccaagaattcttcaatagcatctgatgataaatctgcaatgtgtgtgtgtgagtgtgagtcaagccccactagaaatggttggttttccattatgt |
39315183 |
T |
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| Q |
101 |
tccctacaacaagtcctaaccagttcactcactgcttcggaatgaagcatcaacattacaagtagatcatttatcaatgaga |
182 |
Q |
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| T |
39315182 |
tccctacaacaagtcctaaccagttcactcactg-ttcggaatgaagcatcaacattacaagtagatcatttatcaatgaga |
39315102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 39315078 - 39315044
Alignment:
| Q |
206 |
gtagctacccttccacattttgttgttggcctttg |
240 |
Q |
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| T |
39315078 |
gtagctacccttccacattttgttgttggcctttg |
39315044 |
T |
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